Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a10
         (277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-12|CAB70105.1|   90|Caenorhabditis elegans Hypothetical...    44   2e-05
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    26   3.3  
U64857-12|AAN84849.1|  413|Caenorhabditis elegans Hypothetical p...    25   5.8  

>AL132949-12|CAB70105.1|   90|Caenorhabditis elegans Hypothetical
           protein Y53F4B.14 protein.
          Length = 90

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = -2

Query: 204 GNWKLEVGRMAXYTSFPXGLFFFFNQPKXFEEW 106
           G WKLE GR     +FP G F+ FNQP  F+E+
Sbjct: 2   GGWKLETGRFLLLITFPVGAFWLFNQPTIFKEF 34


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 156 PXGLFFFFNQPKXFEEWXTNTKRQIFP 76
           P G  FF N    F  W TN  +  +P
Sbjct: 571 PFGSNFFNNNYNSFNNWYTNKNKNYYP 597


>U64857-12|AAN84849.1|  413|Caenorhabditis elegans Hypothetical
           protein C37C3.2c protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 76  WEDLSFCICXPFFKXFWLVEKKEQ 147
           W    FC+  P F+   L+ KK Q
Sbjct: 381 WATYVFCVFLPIFEPIQLISKKPQ 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,586,545
Number of Sequences: 27780
Number of extensions: 67416
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)