Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a08
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79600-3|CAB01876.1| 260|Caenorhabditis elegans Hypothetical pr... 150 8e-37
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 29 3.1
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 29 3.1
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 28 5.4
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 27 7.2
AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical ... 27 7.2
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 27 7.2
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 27 9.5
AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical ... 27 9.5
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical... 27 9.5
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical... 27 9.5
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ... 27 9.5
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical... 27 9.5
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical... 27 9.5
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ... 27 9.5
AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z79600-3|CAB01876.1| 260|Caenorhabditis elegans Hypothetical
protein F59C6.5 protein.
Length = 260
Score = 150 bits (363), Expect = 8e-37
Identities = 67/148 (45%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Frame = -2
Query: 474 NVFRAFCNALYNTVDAPVTWFRETVVEP--NQKKYPWYHQNYRRVPTIDQCYDDDVVCDF 301
+++ F + DAP TWFRET+V+P N+ + P+YH+ RVP ID+C +D C +
Sbjct: 31 SIYPRFRYYAHKAFDAPATWFRETIVQPLNNKNRLPYYHRQLTRVPEIDECGVNDKACFY 90
Query: 300 EANAQFKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYGDL 121
EAN Q++ D+ VD IL LRQR + CM+Y PDH + C + + + E +F+KYG+L
Sbjct: 91 EANEQYRLDKMVDGFILQTLRQRVDRCMLYNNPDH-SPCAKVIEDMEENELNFFMKYGEL 149
Query: 120 GAYGDARKAYMKQKHRMVWERRNGPLSD 37
G D R AYMKQKHRM+WERR+ + D
Sbjct: 150 GGESDVRDAYMKQKHRMIWERRHPEIMD 177
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 120 GAYGDARKAYMKQKHRMVWERRNGPLSDLTK*SFKSVINS 1
GAYGD Y + + +W++ GP D T F ++S
Sbjct: 75 GAYGDVGSVYGIAQQKRIWQKPRGP--DATSEEFAHSVSS 112
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 120 GAYGDARKAYMKQKHRMVWERRNGPLSDLTK*SFKSVINS 1
GAYGD Y + + +W++ GP D T F ++S
Sbjct: 243 GAYGDVGSVYGIAQQKRIWQKPRGP--DATSEEFAHSVSS 280
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -2
Query: 282 KRDRAVDSEILSILRQRYEDCMMYEQPDHAT-----KCRSLWDKYKSAEEAWFIKYGDLG 118
+++ ++ ++ ++L Q +C +Y+ + + R D YK E F K+GDL
Sbjct: 541 EQNEGLEEKVENVLAQYRSECELYQNSVSSLQMDRDRLRKDVDLYKGKAEILFTKFGDLV 600
Query: 117 AYGD--ARKAYMK 85
D +KA+ K
Sbjct: 601 KTNDELEKKAHQK 613
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 336 DQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 226
D+ YDD+ E NA+F + DS+ I+ R E
Sbjct: 119 DEAYDDEEDFTVETNAEFNENSLDDSDEYPIVPNRQE 155
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 336 DQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 226
D+ YDD+ E NA+F + DS+ I+ R E
Sbjct: 119 DEAYDDEEDFTVETNAEFNENSLDDSDEYPIVPNRQE 155
>AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical
protein F27B3.5 protein.
Length = 787
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 276 DRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYG 127
D A + S+ + + E M+E T C L DKY + WF ++G
Sbjct: 273 DLAFPKLLESVSQNKLETIDMFEAVAECTYC-CLLDKYLELVQVWFPQFG 321
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 276 DRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYG 127
D A + S+ + + E M+E T C L DKY + WF ++G
Sbjct: 480 DLAFPKLLESVSQNKLETIDMFEAVAECTYC-CLLDKYLELVQVWFPQFG 528
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 198 HATKCRSLWDKYKSAEEAWFIKYGDLGAYGDAR 100
+A K + W+ K AE A F + D+ YGD R
Sbjct: 109 YAMKILNKWEMVKRAETACFREERDVLVYGDRR 141
>AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical
protein Y39B6A.9 protein.
Length = 230
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 174 WDKYKSAEEAWFIKYGDLGAYGDARKAYMKQKHRMVWE 61
+DK + + KY D+G YG + Y KQ H W+
Sbjct: 172 YDKEDAGHKKHHDKY-DIGKYGAKQGGYAKQGHEEGWK 208
>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 300 EANAQFKRDRAVDSEILSILRQRYEDCMMYEQ----PDHATKCRSLWDKY 163
+A A +R R+ S S + DC + E+ D + KCR W+KY
Sbjct: 417 KAKADSERGRSSTSSSSSSFDKLIWDCPLIEKYPFGADASDKCREKWNKY 466
>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 300 EANAQFKRDRAVDSEILSILRQRYEDCMMYEQ----PDHATKCRSLWDKY 163
+A A +R R+ S S + DC + E+ D + KCR W+KY
Sbjct: 417 KAKADSERGRSSTSSSSSSFDKLIWDCPLIEKYPFGADASDKCREKWNKY 466
>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 300 EANAQFKRDRAVDSEILSILRQRYEDCMMYEQ----PDHATKCRSLWDKY 163
+A A +R R+ S S + DC + E+ D + KCR W+KY
Sbjct: 417 KAKADSERGRSSTSSSSSSFDKLIWDCPLIEKYPFGADASDKCREKWNKY 466
>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 300 EANAQFKRDRAVDSEILSILRQRYEDCMMYEQ----PDHATKCRSLWDKY 163
+A A +R R+ S S + DC + E+ D + KCR W+KY
Sbjct: 417 KAKADSERGRSSTSSSSSSFDKLIWDCPLIEKYPFGADASDKCREKWNKY 466
>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 300 EANAQFKRDRAVDSEILSILRQRYEDCMMYEQ----PDHATKCRSLWDKY 163
+A A +R R+ S S + DC + E+ D + KCR W+KY
Sbjct: 417 KAKADSERGRSSTSSSSSSFDKLIWDCPLIEKYPFGADASDKCREKWNKY 466
>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 300 EANAQFKRDRAVDSEILSILRQRYEDCMMYEQ----PDHATKCRSLWDKY 163
+A A +R R+ S S + DC + E+ D + KCR W+KY
Sbjct: 417 KAKADSERGRSSTSSSSSSFDKLIWDCPLIEKYPFGADASDKCREKWNKY 466
>AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical
protein Y48G9A.10 protein.
Length = 722
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 61 FPDHAMLLLHVSFSRITISTEVTIFNEPSFLSRLVLVPKRPAFSCMVW 204
FP + +S+S + + + + S+ L PK+P+++ +VW
Sbjct: 59 FPQDLLKSFFISYSLVFLLRHILKYTYFSYKGYLKESPKKPSYATIVW 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,311
Number of Sequences: 27780
Number of extensions: 250688
Number of successful extensions: 666
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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