Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a06
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0312 + 17395716-17398112                                         29   4.5  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   4.5  

>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 754 AIKYFGSLVGRAFISNNKEINSVRRPNLVIFSVLLLTY 641
           A++  GSL+    IS  +E+     PN  I SVL L+Y
Sbjct: 364 AVRTLGSLLSMEDISKWQEVKETNIPNTDILSVLKLSY 401


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 634  ILIYRYSFFIRIMNSCLSCQNNNSEHMNKTVLSQTV 527
            I + + +F   IM S L+ QNNN  H+N T+++  V
Sbjct: 1823 IAMAKATFDSLIMKSMLAHQNNNLSHLNGTLVADLV 1858


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,915,812
Number of Sequences: 37544
Number of extensions: 228879
Number of successful extensions: 307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)