Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a06
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    29   4.0  
Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical ...    28   9.3  

>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 173 VLYVLFIFINLRLTALYVFDLYHVVILSIS 84
           + YVLF+ I +++T+++  D  H VIL ++
Sbjct: 13  IFYVLFLIIPIKVTSIHFVDSQHNVILILT 42


>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 183 VINCFICTVYFHQSEIDSL--VCV*FISCSYTEYFI 82
           V++CF C ++FH+  +++L   C  F  C Y ++ I
Sbjct: 19  VLSCFACKMFFHRMVVENLHYCCQKFNKC-YEKFII 53


>AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical
           protein F39G3.4 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 183 VINCFICTVYFHQSEIDSLVCV*FISCSYTEYFIGNVS*IFYFRYCI 43
           V+ C  C + ++Q     L C   +SC+    ++G++S IF   Y I
Sbjct: 215 VVACVQCCLGYNQMVSGKLSCFKDLSCANRIEYVGSLSMIFNIIYTI 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,647
Number of Sequences: 27780
Number of extensions: 272031
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)