Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a05
(859 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin pr... 67 2e-11
AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin pr... 67 2e-11
Z77653-1|CAB01124.1| 218|Caenorhabditis elegans Hypothetical pr... 55 7e-08
X04259-1|CAA27814.1| 161|Caenorhabditis elegans cal-1 protein. 55 7e-08
Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical pr... 48 9e-06
AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-li... 48 9e-06
Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical... 43 3e-04
Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C pr... 42 4e-04
U70851-8|AAB09131.1| 164|Caenorhabditis elegans Calmodulin rela... 40 0.002
AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math ... 37 0.016
L14433-5|AAA27976.2| 202|Caenorhabditis elegans Hypothetical pr... 37 0.021
Z81053-2|CAB02878.2| 202|Caenorhabditis elegans Hypothetical pr... 36 0.049
U28740-5|AAA68320.1| 229|Caenorhabditis elegans Hypothetical pr... 36 0.049
U40423-5|AAA81454.2| 156|Caenorhabditis elegans Unidentified vi... 34 0.11
U28731-1|AAA68298.1| 145|Caenorhabditis elegans Hypothetical pr... 33 0.20
U88165-10|AAK21395.1| 161|Caenorhabditis elegans Paralysed arre... 32 0.45
U41625-4|ABC71830.1| 43|Caenorhabditis elegans Hypothetical pr... 32 0.45
U41625-3|AAA83326.1| 264|Caenorhabditis elegans Hypothetical pr... 32 0.45
D45896-1|BAA82524.1| 161|Caenorhabditis elegans troponin C prot... 32 0.45
D45895-1|BAA82523.1| 161|Caenorhabditis elegans troponin C prot... 32 0.45
Z81072-1|CAB03019.1| 311|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z70783-6|CAA94856.1| 195|Caenorhabditis elegans Hypothetical pr... 31 1.4
U40427-2|AAA81468.2| 159|Caenorhabditis elegans Hypothetical pr... 31 1.4
AC024858-1|AAF60872.2| 196|Caenorhabditis elegans Hypothetical ... 31 1.4
AF016435-6|AAB65882.1| 213|Caenorhabditis elegans Hypothetical ... 29 3.2
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 29 5.6
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 29 5.6
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical pr... 28 7.4
U00050-10|AAA50701.1| 153|Caenorhabditis elegans Myosin light c... 28 7.4
L03412-1|AAA28112.1| 153|Caenorhabditis elegans alkali myosin l... 28 7.4
Z12017-4|CAA78051.2| 148|Caenorhabditis elegans Hypothetical pr... 28 9.8
U88169-4|AAB42239.2| 81|Caenorhabditis elegans Hypothetical pr... 28 9.8
>AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin
protein.
Length = 149
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
DEEVDEMIREADIDGDGQVNYEEFVTMMT+K
Sbjct: 119 DEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
+N + E+ +MI E D DG+G +++ EF+TMM K
Sbjct: 42 QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76
>AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin
protein 1 protein.
Length = 149
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
DEEVDEMIREADIDGDGQVNYEEFVTMMT+K
Sbjct: 119 DEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
+N + E+ +MI E D DG+G +++ EF+TMM K
Sbjct: 42 QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76
>Z77653-1|CAB01124.1| 218|Caenorhabditis elegans Hypothetical
protein C13C12.1 protein.
Length = 218
Score = 54.8 bits (126), Expect = 7e-08
Identities = 21/33 (63%), Positives = 30/33 (90%)
Frame = -3
Query: 836 FXDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
F +EEVDEMI+E D+DGDG+++YEEFV MM+++
Sbjct: 186 FSEEEVDEMIKEVDVDGDGEIDYEEFVKMMSNQ 218
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
+N ++E+ EMI E DIDG+GQ+ + EF MM
Sbjct: 112 QNPTEQEILEMINEVDIDGNGQIEFPEFCVMM 143
>X04259-1|CAA27814.1| 161|Caenorhabditis elegans cal-1 protein.
Length = 161
Score = 54.8 bits (126), Expect = 7e-08
Identities = 21/33 (63%), Positives = 30/33 (90%)
Frame = -3
Query: 836 FXDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
F +EEVDEMI+E D+DGDG+++YEEFV MM+++
Sbjct: 129 FSEEEVDEMIKEVDVDGDGEIDYEEFVKMMSNQ 161
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
+N ++E+ EMI E DIDG+GQ+ + EF MM
Sbjct: 55 QNPTEQEILEMINEVDIDGNGQIEFPEFCVMM 86
>Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical
protein C18E9.1 protein.
Length = 171
Score = 48.0 bits (109), Expect = 9e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = -3
Query: 836 FXDEEVDEMIREADIDGDGQVNYEEFVTMMTS 741
F D+EVDE+I E DIDGDGQ++YEEF + ++
Sbjct: 140 FSDQEVDEIIAEIDIDGDGQIDYEEFASTFSA 171
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
+N ++E+ +M+ E DIDG G +++ EF MM
Sbjct: 66 QNPTEQELLDMVNEVDIDGSGTIDFGEFCQMM 97
>AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-like
protein protein.
Length = 171
Score = 48.0 bits (109), Expect = 9e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = -3
Query: 836 FXDEEVDEMIREADIDGDGQVNYEEFVTMMTS 741
F D+EVDE+I E DIDGDGQ++YEEF + ++
Sbjct: 140 FSDQEVDEIIAEIDIDGDGQIDYEEFASTFSA 171
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
+N ++E+ +M+ E DIDG G +++ EF MM
Sbjct: 66 QNPTEQELLDMVNEVDIDGSGTIDFGEFCQMM 97
>Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical
protein T07G12.1 protein.
Length = 182
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 851 TSXRNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
T F +EEVDE+IRE D DGD Q++ +EFV M+
Sbjct: 123 TMGERFSEEEVDEIIREVDKDGDEQIDLDEFVNMV 157
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -3
Query: 839 NFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
N +EE+ M+ E D+DG+G++++ EF MM
Sbjct: 55 NPTEEELLNMVNEYDVDGNGKIDFGEFCKMM 85
>AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical
protein Y73B3A.12 protein.
Length = 116
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQV 774
DEEVDEMIREADIDGDGQ+
Sbjct: 68 DEEVDEMIREADIDGDGQI 86
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 812 MIREADIDGDGQVNYEEFVTMMTSK 738
MI E D DG+G +++ EF+T+M K
Sbjct: 1 MINEVDADGNGTIDFPEFLTVMARK 25
>Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical
protein ZK673.7 protein.
Length = 160
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -3
Query: 839 NFXDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
N +EE+DEMI E D DG G V+++EF+ MM+ +
Sbjct: 127 NVSEEELDEMIAEIDADGSGTVDFDEFMEMMSGE 160
Score = 35.5 bits (78), Expect = 0.049
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -3
Query: 851 TSXRNFXDEEVDEMIREADIDGDGQVNYEEFVTMMTS 741
T + F + ++ ++I+E D DG G++ +EEF M+ +
Sbjct: 46 TMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVAN 82
>AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C
protein.
Length = 160
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -3
Query: 839 NFXDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
N +EE+DEMI E D DG G V+++EF+ MM+ +
Sbjct: 127 NVSEEELDEMIAEIDADGSGTVDFDEFMEMMSGE 160
Score = 35.5 bits (78), Expect = 0.049
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -3
Query: 851 TSXRNFXDEEVDEMIREADIDGDGQVNYEEFVTMMTS 741
T + F + ++ ++I+E D DG G++ +EEF M+ +
Sbjct: 46 TMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVAN 82
>U70851-8|AAB09131.1| 164|Caenorhabditis elegans Calmodulin related
genes protein 3 protein.
Length = 164
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = -3
Query: 836 FXDEEVDEMIREADIDGDGQVNYEEFVTMMT 744
F + EV+EM+ E D DG+G+++YEEFV + +
Sbjct: 134 FDEVEVEEMMNEVDCDGNGEIDYEEFVKIFS 164
Score = 34.7 bits (76), Expect = 0.085
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
+N ++++ E+I + D+DG+GQV + EF MM
Sbjct: 60 QNPTEQQMMEIIHDVDLDGNGQVEFPEFCVMM 91
>AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math
domain containingprotein 25 protein.
Length = 364
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFV 756
+EE+D+ IR ADI GDG V+ EEF+
Sbjct: 314 EEEIDDGIRSADISGDGLVDLEEFI 338
>L14433-5|AAA27976.2| 202|Caenorhabditis elegans Hypothetical
protein C50C3.5 protein.
Length = 202
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = -3
Query: 821 VDEMIREADIDGDGQVNYEEFVTMMTSK 738
V ++R +D+ GDGQ+++EEF+ +TSK
Sbjct: 88 VQAVMRSSDVSGDGQIDFEEFLAAVTSK 115
>Z81053-2|CAB02878.2| 202|Caenorhabditis elegans Hypothetical
protein E02A10.3 protein.
Length = 202
Score = 35.5 bits (78), Expect = 0.049
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = -3
Query: 821 VDEMIREADIDGDGQVNYEEFVTMM 747
+DE+ EAD+DG+G ++Y+EF M+
Sbjct: 168 IDEIFNEADVDGNGVIDYDEFTYMV 192
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -3
Query: 827 EEVDEMIREADIDGDGQVNYEEFVTMM 747
+E+D++I E D G+ Q++++EF +M
Sbjct: 92 DELDKIIDEVDQRGNHQIDFDEFCVVM 118
>U28740-5|AAA68320.1| 229|Caenorhabditis elegans Hypothetical
protein B0563.7 protein.
Length = 229
Score = 35.5 bits (78), Expect = 0.049
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -3
Query: 824 EVDEMIREADIDGDGQVNYEEFVTMM 747
E+D +I+E D DG+G++++EEF M
Sbjct: 88 EIDNVIKEVDADGNGEIDFEEFCACM 113
>U40423-5|AAA81454.2| 156|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 2 protein.
Length = 156
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
D+++ + R D + DG++N++EF MMT K
Sbjct: 125 DQDIKAIYRHVDQNNDGKINFQEFCEMMTRK 155
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTM 750
++E+D M + AD D DG ++++EF+ +
Sbjct: 56 EDELDAMFQAADKDCDGNIDFQEFLVI 82
>U28731-1|AAA68298.1| 145|Caenorhabditis elegans Hypothetical
protein F12A10.5 protein.
Length = 145
Score = 33.5 bits (73), Expect = 0.20
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMM 747
+ E EMI++ D+D DG ++++EFV ++
Sbjct: 115 ETEAKEMIKQGDLDHDGMIDFQEFVNII 142
Score = 30.3 bits (65), Expect = 1.8
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMM 747
+ +++ MI +AD+DG+G ++ +EF+ ++
Sbjct: 42 NSKIETMIEQADLDGNGCIDIDEFLNVL 69
>U88165-10|AAK21395.1| 161|Caenorhabditis elegans Paralysed arrest
at two-fold protein10 protein.
Length = 161
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
D++++E + E D DG G++ +EEF +M +
Sbjct: 129 DQQLEEAVDEIDEDGSGKIEFEEFWELMAGE 159
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
++F ++ + ++IR+ D DG G++ ++EF ++
Sbjct: 49 QDFDEKTLRKLIRKFDADGSGKLEFDEFCALV 80
>U41625-4|ABC71830.1| 43|Caenorhabditis elegans Hypothetical
protein K03A1.4b protein.
Length = 43
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = -3
Query: 839 NFXDEEVDEMIREADIDGDGQVNYE 765
+F + V+++ EADIDGDG++++E
Sbjct: 15 SFPRQVVEQLFNEADIDGDGKISFE 39
>U41625-3|AAA83326.1| 264|Caenorhabditis elegans Hypothetical
protein K03A1.4a protein.
Length = 264
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = -3
Query: 839 NFXDEEVDEMIREADIDGDGQVNYE 765
+F + V+++ EADIDGDG++++E
Sbjct: 236 SFPRQVVEQLFNEADIDGDGKISFE 260
>D45896-1|BAA82524.1| 161|Caenorhabditis elegans troponin C
protein.
Length = 161
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
D++++E + E D DG G++ +EEF +M +
Sbjct: 129 DQQLEEAVDEIDEDGSGKIEFEEFWELMAGE 159
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
++F ++ + ++IR+ D DG G++ ++EF ++
Sbjct: 49 QDFDEKTLRKLIRKFDADGSGKLEFDEFCALV 80
>D45895-1|BAA82523.1| 161|Caenorhabditis elegans troponin C
protein.
Length = 161
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
D++++E + E D DG G++ +EEF +M +
Sbjct: 129 DQQLEEAVDEIDEDGSGKIEFEEFWELMAGE 159
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = -3
Query: 842 RNFXDEEVDEMIREADIDGDGQVNYEEFVTMM 747
++F ++ + ++IR+ D DG G++ ++EF ++
Sbjct: 49 QDFDEKTLRKLIRKFDADGSGKLEFDEFCALV 80
>Z81072-1|CAB03019.1| 311|Caenorhabditis elegans Hypothetical
protein F30A10.1 protein.
Length = 311
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 821 VDEMIREADIDGDGQVNYEEF 759
++ +I EAD+DGD +N+ EF
Sbjct: 273 IERIIEEADLDGDSSINFAEF 293
>Z70783-6|CAA94856.1| 195|Caenorhabditis elegans Hypothetical
protein ZK856.8 protein.
Length = 195
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMM 747
D+ D I EAD D DG+++++EF M
Sbjct: 153 DKIADRTIEEADADRDGKISFDEFCRAM 180
>U40427-2|AAA81468.2| 159|Caenorhabditis elegans Hypothetical
protein F43C9.2 protein.
Length = 159
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 821 VDEMIREADIDGDGQVNYEEFVTMM 747
+ +M + D++GDG++ + EFV MM
Sbjct: 133 ISDMFKATDLNGDGKITFFEFVKMM 157
>AC024858-1|AAF60872.2| 196|Caenorhabditis elegans Hypothetical
protein Y71H2AL.1 protein.
Length = 196
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 818 DEMIREADIDGDGQVNYEEFVTMM 747
D +READ DGDG + ++EF M
Sbjct: 158 DRTMREADRDGDGFITFQEFCNAM 181
>AF016435-6|AAB65882.1| 213|Caenorhabditis elegans Hypothetical
protein F59D6.7 protein.
Length = 213
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMM 747
D+ D+ + EAD D DG++++E+F M
Sbjct: 171 DKIADKTLEEADQDRDGKISFEDFCRAM 198
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
protein C37C3.6c protein.
Length = 1487
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 507 CKRSLTVAVQREDVRCASQCDGISVGLVSAPNLYLC 400
C RS VQ E +C+ C G SV +S NL C
Sbjct: 88 CSRSCGGGVQLEKRQCSGDCTGASVRYISC-NLNAC 122
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
protein C37C3.6a protein.
Length = 1558
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 507 CKRSLTVAVQREDVRCASQCDGISVGLVSAPNLYLC 400
C RS VQ E +C+ C G SV +S NL C
Sbjct: 88 CSRSCGGGVQLEKRQCSGDCTGASVRYISC-NLNAC 122
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
protein C37C3.6b protein.
Length = 2167
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 507 CKRSLTVAVQREDVRCASQCDGISVGLVSAPNLYLC 400
C RS VQ E +C+ C G SV +S NL C
Sbjct: 88 CSRSCGGGVQLEKRQCSGDCTGASVRYISC-NLNAC 122
>Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical
protein ZK337.2 protein.
Length = 543
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 423 TRARHLYHHIATHTGRLPFVPLQLNFS 503
+R+ HL H+ THTG P+ N+S
Sbjct: 407 SRSDHLSTHLRTHTGEKPYACPMCNYS 433
>U00050-10|AAA50701.1| 153|Caenorhabditis elegans Myosin light
chain protein 3, isoforma protein.
Length = 153
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 827 EEVDEMIREADIDGDGQVNYEEFV 756
+E DE+++ + DG+G V YE+F+
Sbjct: 119 DEADELLKGVE-DGEGMVKYEDFI 141
>L03412-1|AAA28112.1| 153|Caenorhabditis elegans alkali myosin
light chain protein.
Length = 153
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 827 EEVDEMIREADIDGDGQVNYEEFV 756
+E DE+++ + DG+G V YE+F+
Sbjct: 119 DEADELLKGVE-DGEGMVKYEDFI 141
>Z12017-4|CAA78051.2| 148|Caenorhabditis elegans Hypothetical
protein R08D7.5 protein.
Length = 148
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMM 747
D + DEMIREA D + +N ++F +M
Sbjct: 115 DADFDEMIREAGGDNNTGINEQQFFEIM 142
>U88169-4|AAB42239.2| 81|Caenorhabditis elegans Hypothetical
protein T03F1.11 protein.
Length = 81
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 815 EMIREADIDGDGQVNYEEF 759
++I+EAD DGD ++ ++EF
Sbjct: 54 QVIKEADKDGDSKITFDEF 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,708
Number of Sequences: 27780
Number of extensions: 316060
Number of successful extensions: 983
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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