Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a04
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    95   1e-20
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    27   3.0  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   3.9  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   3.9  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   5.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.2  

>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
 Frame = -1

Query: 742 LDGLVXDPRIKNLVNRLEKEFIPS----LLNQGNILLCKDVDNVSKYFPLCMLNLHQILR 575
           L  L  D R+  ++N L K F+      +  +   +    VD+   +FPLC  +LH++L+
Sbjct: 241 LPRLDEDDRLLPILNHLSKGFVAPESSIVAPKSGAITAGQVDSFVSHFPLCAKHLHEVLK 300

Query: 574 QKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEYTQSPDGNHRCSHSWEQDEKKFVYGI 395
           +   L H  R  Y LFLK IG+ V EA+ FW+  +T   +         ++  K++ Y I
Sbjct: 301 RDKHLRHFGRLQYGLFLKDIGLSVDEALVFWRKSFTNVTE---------DKFNKEYRYNI 351

Query: 394 RHMYGLEGARKNYVSVNCHRIQSMDNCAEG---GCP 296
           RH YGLEG RKNY   NC +I +      G   GCP
Sbjct: 352 RHTYGLEGNRKNYKGYNCQQILTGPQLGPGDAHGCP 387


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 359 ILSGTFQAIHMPNTIHKF--FLILFPTMTTSVIAIRTLSILCFPEF 490
           ++ G F  + + N +  F  FL + P  + S + I++LSI+  P F
Sbjct: 287 VVKGYFPQLQLKNVLSSFLEFLEVTPAASVSDMLIQSLSIINSPSF 332


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 436 DYICDCHQDSEYTLLSRILSLLEQAFQYFSRIEYNK 543
           DY+  CHQ+  +  LS   +L ++  + F  + Y K
Sbjct: 150 DYVIFCHQEESFWPLSEPANLKKRFDEIFESLRYAK 185


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 487 FWKAEYTQSPDGNHRCSHSWEQDEKKFVYGIRHMY 383
           FW   Y+ SP+ N   SH +  +++    G  + Y
Sbjct: 237 FWATGYSDSPEANMYGSHPFYMEQRYIPIGTTNTY 271


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 721 PRIKNLVNRLEKEFIPSLLNQGNILLCKDVDNVSKYF 611
           P ++NL + L   ++P  + +G+I++C D+D   + F
Sbjct: 587 PSLRNLKS-LSHSYLPIEIMKGHIIVCGDLDGRIRVF 622


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 407  KFFLILFPTMTTSVIAIRTLSILC-FPEFYR 496
            KFF  +F  M   V+ + TL+++C  P F R
Sbjct: 908  KFFKSIFRPMNVFVLKVGTLAVICTIPAFCR 938


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,050
Number of Sequences: 5004
Number of extensions: 71505
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)