Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a04
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0021 - 12521013-12521116,12521476-12521533,12522418-125225...    60   1e-09
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    28   7.2  
11_08_0003 + 27492503-27492812,27492863-27493148,27495399-274956...    28   9.5  
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893...    28   9.5  

>07_03_0021 -
           12521013-12521116,12521476-12521533,12522418-12522525,
           12522609-12522702,12522875-12523035,12523095-12523169,
           12523431-12523490,12523589-12523648,12523935-12523982,
           12524065-12524113,12524368-12524432,12524522-12524605,
           12524710-12524729,12524777-12524801,12524993-12525052,
           12525130-12525211,12525344-12525447,12525662-12525723,
           12525840-12525996
          Length = 491

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 28/72 (38%), Positives = 42/72 (58%)
 Frame = -1

Query: 580 LRQKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEYTQSPDGNHRCSHSWEQDEKKFVY 401
           LR+ H L H  R  + LFLK  G+ +++A+ FW+AE++Q            E+ +K++ Y
Sbjct: 253 LRENHHLKHGGRMQFGLFLKGAGLKLEDALAFWRAEFSQKVGS--------ERFDKEYAY 304

Query: 400 GIRHMYGLEGAR 365
            IRH YG EG R
Sbjct: 305 SIRHNYGKEGKR 316


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 526 LKSIGMPVQEAIEFWKAEYTQSPDGNHRCSHSWEQDEKKFVYGIRH 389
           LK I   V+E  +F   E+T++P   +R +HS   DE   ++G  H
Sbjct: 368 LKKINDLVEEMNKFGLMEHTEAPQLPYRLTHS-GLDESADIFGREH 412


>11_08_0003 +
           27492503-27492812,27492863-27493148,27495399-27495652,
           27496645-27496830,27497042-27498117
          Length = 703

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -2

Query: 519 VLECLFKKR*NSGKQSILRVLMAITDVVIVGNKMRKNLCMVLGICMAWKVPERIMFQSI 343
           V E  F+K  +S     L    ++ ++++       N+  ++G CM  +VP  ++F+ I
Sbjct: 443 VKEMAFRKSISSNGDGTLGQKASVNEIIVQSQMRHDNVVRLIGCCMETEVP-MLVFEFI 500


>08_01_0906 +
           8933230-8933797,8933894-8934543,8937956-8938615,
           8939751-8939817,8940421-8940724,8942993-8942996,
           8944539-8946449
          Length = 1387

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -1

Query: 685 EFIPSLLNQGNILLCKDVDNVSKYFPLCMLNLHQILRQKHRLSHSQRFYYTL 530
           EFI SLL Q +  +C + DN  K   L M+    +L ++ +   SQ+F   L
Sbjct: 293 EFIRSLLAQFHKNVCPEQDNTVKILDL-MVATDDVLIEEFKQQLSQKFLVVL 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,778
Number of Sequences: 37544
Number of extensions: 352816
Number of successful extensions: 913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)