Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a04
(775 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)... 96 1e-19
BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypepti... 96 1e-19
AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A... 67 6e-11
AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A... 67 6e-11
AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A... 67 6e-11
U29091-1|AAB02395.1| 472|Homo sapiens selenium-binding protein ... 31 3.5
>X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)
protein.
Length = 509
Score = 96.3 bits (229), Expect = 1e-19
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 10/219 (4%)
Frame = -1
Query: 742 LDGLVXDPRIKNLVNRLEKEFI-PSLLNQGNI--LLCKDVDNVS-KYFPLCMLNLHQILR 575
L + D R++ L+N L + QGN+ + +D +S K FP CM LH+ LR
Sbjct: 237 LPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALR 296
Query: 574 QKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEYTQSPDGNHRCSHSWEQDEKKFVYGI 395
+ H L H R Y LFLK IG+ +++A++FWK E+ + ++ +K + Y I
Sbjct: 297 ENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKG-------KMDPDKFDKGYSYNI 349
Query: 394 RHMYGLEGARKNYVSVNCHRIQSMDNCAEG---GCPXXXXXXXXXXXXLENH--SQISMS 230
RH +G EG R +Y +C +I + ++G GCP L+++ S +S
Sbjct: 350 RHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGIS 409
Query: 229 QLYELKKKKQYTSACILTLNNIEECDNYRFNFT-PVKYF 116
Q+ +L K Y AC I D+ F+ P ++F
Sbjct: 410 QILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFF 448
>BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypeptide
2 (58kDa) protein.
Length = 509
Score = 96.3 bits (229), Expect = 1e-19
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 10/219 (4%)
Frame = -1
Query: 742 LDGLVXDPRIKNLVNRLEKEFI-PSLLNQGNI--LLCKDVDNVS-KYFPLCMLNLHQILR 575
L + D R++ L+N L + QGN+ + +D +S K FP CM LH+ LR
Sbjct: 237 LPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALR 296
Query: 574 QKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEYTQSPDGNHRCSHSWEQDEKKFVYGI 395
+ H L H R Y LFLK IG+ +++A++FWK E+ + ++ +K + Y I
Sbjct: 297 ENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKG-------KMDPDKFDKGYSYNI 349
Query: 394 RHMYGLEGARKNYVSVNCHRIQSMDNCAEG---GCPXXXXXXXXXXXXLENH--SQISMS 230
RH +G EG R +Y +C +I + ++G GCP L+++ S +S
Sbjct: 350 RHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGIS 409
Query: 229 QLYELKKKKQYTSACILTLNNIEECDNYRFNFT-PVKYF 116
Q+ +L K Y AC I D+ F+ P ++F
Sbjct: 410 QILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFF 448
>AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 67.3 bits (157), Expect = 6e-11
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Frame = -1
Query: 742 LDGLVXDPRIKNLVNRLEKEFIPS-LLNQGNI--LLCKDVDNVS-KYFPLCMLNLHQILR 575
L + D R++ L+N L + QGN+ + +D +S K FPL M LH+ LR
Sbjct: 237 LPAVQSDERLQPLLNHLSHSYTSQDYSTQGNVGKISLDQIDLLSTKSFPLYMHQLHKALR 296
Query: 574 QKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEY 470
+ H L H R Y LFLK IG+ +++ ++FWK E+
Sbjct: 297 ENHHLCHGGRMQYVLFLKGIGLTLEQTLQFWKQEF 331
>AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 67.3 bits (157), Expect = 6e-11
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Frame = -1
Query: 742 LDGLVXDPRIKNLVNRLEKEFIPS-LLNQGNI--LLCKDVDNVS-KYFPLCMLNLHQILR 575
L + D R++ L+N L + QGN+ + +D +S K FPL M LH+ LR
Sbjct: 237 LPAVQSDERLQPLLNHLSHSYTSQDYSTQGNVGKISLDQIDLLSTKSFPLYMHQLHKALR 296
Query: 574 QKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEY 470
+ H L H R Y LFLK IG+ +++ ++FWK E+
Sbjct: 297 ENHHLCHGGRMQYVLFLKGIGLTLEQTLQFWKQEF 331
>AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 67.3 bits (157), Expect = 6e-11
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Frame = -1
Query: 742 LDGLVXDPRIKNLVNRLEKEFIPS-LLNQGNI--LLCKDVDNVS-KYFPLCMLNLHQILR 575
L + D R++ L+N L + QGN+ + +D +S K FPL M LH+ LR
Sbjct: 237 LPAVQSDERLQPLLNHLSHSYTSQDYSTQGNVGKISLDQIDLLSTKSFPLYMHQLHKALR 296
Query: 574 QKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEY 470
+ H L H R Y LFLK IG+ +++ ++FWK E+
Sbjct: 297 ENHHLCHGGRMQYVLFLKGIGLTLEQTLQFWKQEF 331
>U29091-1|AAB02395.1| 472|Homo sapiens selenium-binding protein
protein.
Length = 472
Score = 31.5 bits (68), Expect = 3.5
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -1
Query: 709 NLVNRLEKEFIPSLLNQGNILLCKDVDNVS---KYFPLCMLN 593
+L + EK+F P L+ +G+++L DVD V K P C+++
Sbjct: 404 SLYSAWEKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNCLVD 445
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,868,409
Number of Sequences: 237096
Number of extensions: 2131690
Number of successful extensions: 7835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7835
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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