Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a04
         (775 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase ...    75   8e-14
AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p pro...    75   8e-14
AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA...    75   8e-14
AY094910-1|AAM11263.1|  420|Drosophila melanogaster RH14937p pro...    34   0.19 
AE014297-4561|AAF57022.2|  420|Drosophila melanogaster CG9743-PA...    34   0.19 
AE013599-3546|AAM68236.3|  390|Drosophila melanogaster CG30330-P...    31   1.3  

>AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase
           protein.
          Length = 533

 Score = 75.4 bits (177), Expect = 8e-14
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
 Frame = -1

Query: 640 KDVDNVSKY-FPLCMLNLHQILRQKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEYTQ 464
           + +D +SK   PLCM   H+ +R  H + HS R  Y LFLK IG+ +++++ FW+ E+T+
Sbjct: 285 ESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTK 344

Query: 463 SPDGNHRCSHSWEQDEKKFVYGIRHMYGLEGARKNYVSVNCHRIQSMDNCAEGGC 299
             D + + + S+E       Y I H YG +G+  NY   +C +I   D    G C
Sbjct: 345 KMDAD-KFTRSYE-------YNIYHNYGKKGSMVNYTPYSCAKI-IKDVAGPGDC 390


>AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p
           protein.
          Length = 533

 Score = 75.4 bits (177), Expect = 8e-14
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
 Frame = -1

Query: 640 KDVDNVSKY-FPLCMLNLHQILRQKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEYTQ 464
           + +D +SK   PLCM   H+ +R  H + HS R  Y LFLK IG+ +++++ FW+ E+T+
Sbjct: 285 ESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTK 344

Query: 463 SPDGNHRCSHSWEQDEKKFVYGIRHMYGLEGARKNYVSVNCHRIQSMDNCAEGGC 299
             D + + + S+E       Y I H YG +G+  NY   +C +I   D    G C
Sbjct: 345 KMDAD-KFTRSYE-------YNIYHNYGKKGSMVNYTPYSCAKI-IKDVAGPGDC 390


>AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA
           protein.
          Length = 533

 Score = 75.4 bits (177), Expect = 8e-14
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
 Frame = -1

Query: 640 KDVDNVSKY-FPLCMLNLHQILRQKHRLSHSQRFYYTLFLKSIGMPVQEAIEFWKAEYTQ 464
           + +D +SK   PLCM   H+ +R  H + HS R  Y LFLK IG+ +++++ FW+ E+T+
Sbjct: 285 ESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTK 344

Query: 463 SPDGNHRCSHSWEQDEKKFVYGIRHMYGLEGARKNYVSVNCHRIQSMDNCAEGGC 299
             D + + + S+E       Y I H YG +G+  NY   +C +I   D    G C
Sbjct: 345 KMDAD-KFTRSYE-------YNIYHNYGKKGSMVNYTPYSCAKI-IKDVAGPGDC 390


>AY094910-1|AAM11263.1|  420|Drosophila melanogaster RH14937p
           protein.
          Length = 420

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 550 QRFYYTLF-LKSIGMPVQEAIEFWKAEYTQSPDGNHRCSHSWEQDEKKFVYGIRHMYGLE 374
           +++Y  LF L SI +PV     FW  +   S   N     +W  +   FV  + HMYG +
Sbjct: 245 RKYYIPLFALCSIILPVAVPWYFWNEDLWMSFWINFNMRFTWTLNVAFFVNSVAHMYGNK 304

Query: 373 GARKNYVS 350
              KN +S
Sbjct: 305 PYDKNLMS 312


>AE014297-4561|AAF57022.2|  420|Drosophila melanogaster CG9743-PA
           protein.
          Length = 420

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 550 QRFYYTLF-LKSIGMPVQEAIEFWKAEYTQSPDGNHRCSHSWEQDEKKFVYGIRHMYGLE 374
           +++Y  LF L SI +PV     FW  +   S   N     +W  +   FV  + HMYG +
Sbjct: 245 RKYYIPLFALCSIILPVAVPWYFWNEDLWMSFWINFNMRFTWTLNVAFFVNSVAHMYGNK 304

Query: 373 GARKNYVS 350
              KN +S
Sbjct: 305 PYDKNLMS 312


>AE013599-3546|AAM68236.3|  390|Drosophila melanogaster CG30330-PA
           protein.
          Length = 390

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 148 NYHILQYCLKSRY-KLMCIVFFSLIHIIVTLKFVNDSLIV 264
           N  I+QYC +S   K  C+     +HIIVTL  + + L +
Sbjct: 118 NPDIIQYCRRSIVSKFFCVTMTETLHIIVTLAMMRNRLSI 157


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,591,849
Number of Sequences: 53049
Number of extensions: 661247
Number of successful extensions: 1457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3581842374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)