Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a04
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81137-1|CAB03469.2|  503|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AF016444-3|AAN73878.1|  320|Caenorhabditis elegans Serpentine re...    32   0.40 
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    31   1.2  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    30   1.6  
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    30   2.1  
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    29   2.8  
Z72507-9|CAC35886.1|  282|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical p...    28   8.5  
U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.       28   8.5  

>Z81137-1|CAB03469.2|  503|Caenorhabditis elegans Hypothetical
           protein W02D9.1 protein.
          Length = 503

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
 Frame = -1

Query: 658 GNILLCKD-VDNVSKY-FPLCMLNLHQILRQKHRLSHSQRFYYTLFLKSIGMPVQEAIEF 485
           G+I++ +  +D +S+  F  CM  +H  LR  H L +  R  Y LFLK IG+ + EAI  
Sbjct: 289 GSIIVTRHMIDKLSRRSFAPCMKQMHNHLRVNHHLKYGARRQYGLFLKGIGLSLDEAIAM 348

Query: 484 WKAEYTQSPDGNHRCSHSWEQDEKKFVYGIRHMYGLEGARKNYVSVNCHRI--QSMDNCA 311
            + E+T+            ++ +K++ Y IR+MYG EG R    +++C  I  ++  +  
Sbjct: 349 MRDEFTKKITS--------DKFDKEYGYNIRYMYGKEGRRVAQTAMSCATIILRNPPSAV 400

Query: 310 E-GGCPXXXXXXXXXXXXLENHSQISMSQ---LYELKKKKQYTSAC---ILTLNNIEE 158
           +  GCP            L + + +   Q   + EL +  QY  AC      ++N+EE
Sbjct: 401 DCHGCPFRHSEKQVLKQKLGSDAILKKEQIERIAELAELNQYDKACTRYFEFMHNLEE 458


>AF016444-3|AAN73878.1|  320|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 11 protein.
          Length = 320

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 58  ISLSVIHLFHVIDFVLDSMKSI*LV*N*IYNYHILQYCLKSRYKLMCIVF 207
           I++ +I   H+I F+L     I +    +YNY +L YC      + C VF
Sbjct: 46  INVKIILQVHLIGFILHCYSRIVIHSLDLYNYMVLDYCSMPPSTIRCFVF 95


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 37  SSLFK*EISLSVIHLFHVIDFVLDSMKSI*LV*N*IYNYHILQYCLKSRYKLMCIVF 207
           S LF    ++ +I   H+  F L S+  I L    +Y+Y +L YC      + C VF
Sbjct: 51  SKLF--HFNVIIIFQLHLFGFFLHSLNRIFLHSTDLYSYTMLDYCNMPAKTMRCFVF 105


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
 Frame = +2

Query: 353 NIILSGTFQAIHMPNTIHKFFLILFPTMTTSVIAIR---TLSILCF-PEFYRFLNRH 511
           N+++   FQ++++  +I++FF +LFP     +++I+    L ILC+   F+  +  H
Sbjct: 103 NLLVYNEFQSVYL--SINRFFAMLFPLRFNWLLSIKFTLLLHILCYGNRFWNVITEH 157


>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
            protein F25G6.2 protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = -1

Query: 724  DPRIKNLVNRLEKEFIPSLLNQGNILLCKDVDNVSKYFPLCMLNLHQILRQKHRLSHSQR 545
            D   + LVN LE  F P+LL        + ++ V K+  +  L LH +    H+    + 
Sbjct: 959  DNEAELLVNNLEFLFDPALLKPDTA--SQAIEAVFKWENVPFLFLHSLYTLFHKFKTFES 1016

Query: 544  FYYTLFLKSIGMPVQEAIEFWKAEY 470
            F   LF K     + +  + WK  +
Sbjct: 1017 FVANLFYKVTEKKMYQQSDRWKQAF 1041


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 58  ISLSVIHLFHVIDFVLDSMKSI*LV*N*IYNYHILQYCLKSRYKLMCIVFFS 213
           I++++I   H+  F +     I L    +YNY +  YC  +   + C VF S
Sbjct: 56  INVTIIFQVHLFGFFIHFFSRIILHGLDLYNYAVFDYCDMAASTIRCFVFRS 107


>Z72507-9|CAC35886.1|  282|Caenorhabditis elegans Hypothetical
           protein F17C11.11 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 617 IFPTVYVESSSNFKTKAQ-TIPFTEVLLYSILEK-YWNA 507
           +  T++VES  N K KAQ  I  +  ++YS+ +K  W A
Sbjct: 38  VMKTIHVESEENLKFKAQEDIDMSPFIMYSLNKKRRWEA 76


>Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10b protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 253 NHSQISMSQLYELKKKKQYTSACILTLNNIEECDNYRFNFTPVKYFSLN 107
           + SQI +SQ Y+      + + C   LN  E      F+FT + + SLN
Sbjct: 410 SESQIFISQSYDATT--HFETTCKDVLNMFERGTTKEFDFTNITHLSLN 456


>Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10a protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 253 NHSQISMSQLYELKKKKQYTSACILTLNNIEECDNYRFNFTPVKYFSLN 107
           + SQI +SQ Y+      + + C   LN  E      F+FT + + SLN
Sbjct: 395 SESQIFISQSYDATT--HFETTCKDVLNMFERGTTKEFDFTNITHLSLN 441


>U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 253 NHSQISMSQLYELKKKKQYTSACILTLNNIEECDNYRFNFTPVKYFSLN 107
           + SQI +SQ Y+      + + C   LN  E      F+FT + + SLN
Sbjct: 395 SESQIFISQSYDATT--HFETTCKDVLNMFERGTTKEFDFTNITHLSLN 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,252
Number of Sequences: 27780
Number of extensions: 378067
Number of successful extensions: 1032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)