Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a04
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 156 HSSILFKVKIQADVYCFFFFNSYNCDIEIC 245
           + ++ +  ++ A + C   F  Y  DI+IC
Sbjct: 101 NKTVKYSARMHAIIACQMEFQLYPMDIQIC 130


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 172 NNIEECDNYRFNFTPVKYFSLNLKQNLLHEI 80
           NN    +NY++N+    Y + N  + L + I
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 172 NNIEECDNYRFNFTPVKYFSLNLKQNLLHEI 80
           NN    +NY++N+    Y + N  + L + I
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 YKLMCIVFFSLIHIIVTLKFVNDSL 258
           Y+L CI+FF +  + + + ++   L
Sbjct: 206 YQLSCILFFLIPMVFIAVLYIRIGL 230


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 243 KFQCHNYMN 217
           +F CHNYM+
Sbjct: 175 EFDCHNYMS 183


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 345  IVIEYRVWTIVLKEVAHLNISMIKNY 268
            ++ EY++    L EV   +++ +KN+
Sbjct: 1009 LIYEYQIHPKTLNEVLQADMNALKNF 1034


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,255
Number of Sequences: 438
Number of extensions: 4946
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)