Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a03
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    26   0.35 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    26   0.35 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    26   0.35 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    26   0.35 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.7  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 270 VQNYVLNTISNTKAYNMLHYFTVSYIK 350
           + + + NTI N   Y  L Y+ ++YI+
Sbjct: 304 ISSLLNNTIHNNNNYKKLQYYNINYIE 330


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 270 VQNYVLNTISNTKAYNMLHYFTVSYIK 350
           + + + NTI N   Y  L Y+ ++YI+
Sbjct: 315 ISSLLNNTIHNNNNYKKLQYYNINYIE 341


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 270 VQNYVLNTISNTKAYNMLHYFTVSYIK 350
           + + + NTI N   Y  L Y+ ++YI+
Sbjct: 315 ISSLLNNTIHNNNNYKKLQYYNINYIE 341


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 270 VQNYVLNTISNTKAYNMLHYFTVSYIK 350
           + + + NTI N   Y  L Y+ ++YI+
Sbjct: 304 ISSLLNNTIHNNNNYKKLQYYNINYIE 330


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 297 SNTKAYNMLHYFTVSYIKYDKLTECSSHSM 386
           SNT   N+L +    Y+K  KL +   H +
Sbjct: 336 SNTMFINILKFLKQKYVKNSKLEKVIKHDI 365


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 552 LLAKHTLSNYSDFSTKI*LNN 490
           +LA+ T  N++DFS  I +NN
Sbjct: 471 VLARFTHLNHADFSYTIVINN 491


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 151 YHAYLVLVIKSKYIDS*IKYENILCLHNT 237
           Y+  +   +KS+Y ++ I+YE I  + NT
Sbjct: 277 YYVNMEPFMKSQYEENNIEYEGIQDIFNT 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,214
Number of Sequences: 438
Number of extensions: 4366
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)