Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p23
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    28   1.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.6  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   6.0  

>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 471 EPASDLAANKRISLLDTPVDASCQSVCGTCRLSAMMDPTVRL 596
           E  SD A+ + I + +  +DA  +S CG C +S + D   R+
Sbjct: 247 EKRSDGASYRAIRVNNENIDAFTESPCGNCPVSDICDANSRV 288


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 372 TPPELTSHYPKGATLNRDF 316
           TPP  +SH+P  ++ N DF
Sbjct: 2   TPPSSSSHFPSPSSANNDF 20


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 565 SLQVPHTDWQEASTGVSRREILLLAAKSLAGSYKRVLAVS 446
           SL++P TD+   ST +S+RE   L+ ++ +  +  V A +
Sbjct: 141 SLEIPPTDFLSTSTELSKRE-SCLSTETSSSKFSAVTAAT 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,235
Number of Sequences: 5004
Number of extensions: 46875
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)