Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16p23
(701 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC017066-1|AAH17066.1| 444|Homo sapiens proline-rich coiled-coi... 48 3e-05
AL831963-1|CAD38605.1| 445|Homo sapiens hypothetical protein pr... 48 3e-05
AK090486-1|BAC03467.1| 305|Homo sapiens FLJ00410 protein protein. 48 3e-05
AK057437-1|BAB71487.1| 445|Homo sapiens protein ( Homo sapiens ... 48 3e-05
AJ515429-1|CAD56439.1| 445|Homo sapiens hypothetical protein pr... 48 3e-05
AJ515428-1|CAD56438.1| 445|Homo sapiens hypothetical protein pr... 48 3e-05
AJ427339-1|CAD22113.1| 445|Homo sapiens hypothetical protein pr... 48 3e-05
AJ441110-1|CAD29585.2| 462|Homo sapiens hypothetical protein pr... 43 0.001
AJ515158-1|CAD56470.1| 464|Homo sapiens hypothetical protein pr... 40 0.011
>BC017066-1|AAH17066.1| 444|Homo sapiens proline-rich coiled-coil 1
protein.
Length = 444
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSYKRVL 455
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++AG YK+ L
Sbjct: 389 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRL 439
>AL831963-1|CAD38605.1| 445|Homo sapiens hypothetical protein
protein.
Length = 445
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSYKRVL 455
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++AG YK+ L
Sbjct: 390 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRL 440
>AK090486-1|BAC03467.1| 305|Homo sapiens FLJ00410 protein protein.
Length = 305
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSYKRVL 455
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++AG YK+ L
Sbjct: 250 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRL 300
>AK057437-1|BAB71487.1| 445|Homo sapiens protein ( Homo sapiens
cDNA FLJ32875 fis, clone TESTI2004031. ).
Length = 445
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSYKRVL 455
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++AG YK+ L
Sbjct: 390 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRL 440
>AJ515429-1|CAD56439.1| 445|Homo sapiens hypothetical protein
protein.
Length = 445
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSYKRVL 455
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++AG YK+ L
Sbjct: 390 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRL 440
>AJ515428-1|CAD56438.1| 445|Homo sapiens hypothetical protein
protein.
Length = 445
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSYKRVL 455
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++AG YK+ L
Sbjct: 390 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRL 440
>AJ427339-1|CAD22113.1| 445|Homo sapiens hypothetical protein
protein.
Length = 445
Score = 48.0 bits (109), Expect = 3e-05
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSYKRVL 455
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++AG YK+ L
Sbjct: 390 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRL 440
>AJ441110-1|CAD29585.2| 462|Homo sapiens hypothetical protein
protein.
Length = 462
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSY 467
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++A Y
Sbjct: 390 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIADDY 436
>AJ515158-1|CAD56470.1| 464|Homo sapiens hypothetical protein
protein.
Length = 464
Score = 39.5 bits (88), Expect = 0.011
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 604 TGYSLTVGSIMADSL-QVPHTDWQEASTGVSRREILLLAAKSLAGSYKRV 458
+G +TVG ++ SL V TDW A TG+SRR+++ AA+++ + V
Sbjct: 390 SGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIENPQRAV 439
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,202,409
Number of Sequences: 237096
Number of extensions: 1735244
Number of successful extensions: 5558
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5535
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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