Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16p19
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 29 0.089
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 0.27
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 0.63
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 1.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 1.9
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 2.5
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 2.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 24 3.4
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 24 4.4
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 4.4
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 24 4.4
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 24 4.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 23 5.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 5.9
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 23 7.8
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 23 7.8
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 23 7.8
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 29.5 bits (63), Expect = 0.089
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 57 TDKVCGLEFFTTQSPSEKILELNTTSPSPQNNSKELASKNSLHEVF 194
T + C LE + SEK +N T N SK+ NSL E F
Sbjct: 165 TPRPCTLEAYVIAKASEKAFPINETLSHLANLSKQDCVANSLSEPF 210
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.9 bits (59), Expect = 0.27
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 99 PSEKILELNTTSPSPQNNSKELASK-NSLHEVFP 197
PS K + SP+ +NNSK+ AS NS H P
Sbjct: 201 PSNKSSPVKHVSPNVKNNSKKTASSVNSNHSSIP 234
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 0.63
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 26 GYTSSQSIRFYGQGLRAGILYDPISIREDPRTEYYLTFSTEQLQRTC 166
GY + +Y +GL+A +L D I + Y + Q QR C
Sbjct: 361 GYDDINQMFWYSKGLKALLLSDGSRIMDADVASRYFLLADIQWQRVC 407
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.0 bits (52), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 211 EWVPIGKTSWRLFLDASSLELFCGEGEVVFS 119
EW +G+ ++RL ++E FC E +FS
Sbjct: 556 EWEILGEVAFRLHHRVEAVEAFCACLESMFS 586
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 1.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 36 LLNRYASTDKVCG 74
LLN Y ST+K CG
Sbjct: 305 LLNHYVSTEKTCG 317
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 2.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 93 QSPSEKILELNTTSPSPQNNSKELASKNSLHE 188
+SPS I T PS + SK+LAS + + +
Sbjct: 608 RSPSTVIPHTQTEVPSANDTSKQLASLHDMRK 639
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 2.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 42 NRYASTDKVCGLEFFTTQSPSEKILELNTTSPSPQ 146
NR +STD + L T+Q P + L L + +P+
Sbjct: 273 NRCSSTDTLSSLSRLTSQDPLKASLPLQSPPLAPK 307
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 3.4
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +3
Query: 81 FFTTQSPSEKILELNTTSPSPQNNSKELASKNSLHEVFPIG 203
F T P+E T++P NN+K N F G
Sbjct: 335 FGNTSKPTENTSTTATSAPPLSNNTKPAEGANQTSSGFSFG 375
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 4.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 214 VEWVPIGKTSWRLFLDASSLE 152
+ W+ I + W F DAS L+
Sbjct: 505 ISWLSIPASRWSTFYDASKLD 525
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 23.8 bits (49), Expect = 4.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 90 TQSPSEKILELNTTSPSPQNNSKELASKNSLHEV 191
T++PS + N + PS N L K++ H++
Sbjct: 75 TETPSFSVSIENPSKPSAAFNDASLGKKSTEHQI 108
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 23.8 bits (49), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 84 FTTQSPSEKILELNTTSPSPQNNSKELA-SKNSLHEVFPIGT 206
+ T++ E L + +P+ S ++ S NS H FPIG+
Sbjct: 497 YLTKNDEEDSASLASLKVAPKYVSHPVSLSSNSFHTEFPIGS 538
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 23.8 bits (49), Expect = 4.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 51 ASTDKVCGLEFFTTQSPSEKILELNTTSPSPQ 146
A D+V GLE T S K+ N PSPQ
Sbjct: 196 AVDDQVVGLETTRTTSSIPKVDGKNWEYPSPQ 227
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 31 HFFSIDTLLRTRFAGWNSLR 90
H F++D L T F NSLR
Sbjct: 607 HSFNLDDLSNTNFGSNNSLR 626
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.4 bits (48), Expect = 5.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 80 ILYDPISIREDPRTEYYLTFSTEQ 151
I+Y PIS +D +T LT S +Q
Sbjct: 2042 IIYTPISSGQDVQTSALLTASDKQ 2065
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.0 bits (47), Expect = 7.8
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +3
Query: 39 LNRYASTDKVCGLEFFTTQSPSEKILELNTTSPSPQNNSKELASKNSL 182
L + + G ++ +L L+ +SPS NN+ L + NS+
Sbjct: 337 LKGFVEEKRTIGFIIYSVLDALFDLLSLDYSSPSFLNNTLSLMNANSI 384
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 191 LSDWNPFHLPYFSAPVNNHFTDFRI 265
LS WNP +P + P + F F +
Sbjct: 481 LSAWNPLAIPEMALPPCHIFCQFYV 505
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 23.0 bits (47), Expect = 7.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 117 ELNTTSPSPQNNSKELASKNSLH--EVFPIGTH 209
ELN +N+ +LA KNS+H E++ + H
Sbjct: 556 ELNMIIDLIRNDLHQLAKKNSVHVPELYSVEEH 588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,191,656
Number of Sequences: 5004
Number of extensions: 22849
Number of successful extensions: 84
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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