Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p19
         (272 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020957-1|AAH20957.1|  642|Homo sapiens C17orf71 protein protein.     29   3.5  
AK026858-1|BAB15576.1|  991|Homo sapiens protein ( Homo sapiens ...    29   3.5  
AK001449-1|BAA91699.1|  642|Homo sapiens protein ( Homo sapiens ...    29   3.5  
AF349467-1|AAL83913.1| 1023|Homo sapiens amplified in breast can...    29   3.5  
AK096011-1|BAC04672.1|  504|Homo sapiens protein ( Homo sapiens ...    28   4.6  
AB051557-1|BAB21861.1| 1307|Homo sapiens KIAA1770 protein protein.     28   6.1  

>BC020957-1|AAH20957.1|  642|Homo sapiens C17orf71 protein protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 88  RPNLHQRRSSN*-ILPHLLHRTTPKNLHPRIVSMRSFRLEP 207
           RPN   R++S    LP +LH   PK L P+  S    +L P
Sbjct: 384 RPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGP 424


>AK026858-1|BAB15576.1|  991|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23205 fis, clone ADSE00359. ).
          Length = 991

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 88  RPNLHQRRSSN*-ILPHLLHRTTPKNLHPRIVSMRSFRLEP 207
           RPN   R++S    LP +LH   PK L P+  S    +L P
Sbjct: 733 RPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGP 773


>AK001449-1|BAA91699.1|  642|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10587 fis, clone NT2RP2004042. ).
          Length = 642

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 88  RPNLHQRRSSN*-ILPHLLHRTTPKNLHPRIVSMRSFRLEP 207
           RPN   R++S    LP +LH   PK L P+  S    +L P
Sbjct: 384 RPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGP 424


>AF349467-1|AAL83913.1| 1023|Homo sapiens amplified in breast cancer
           2 protein.
          Length = 1023

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 88  RPNLHQRRSSN*-ILPHLLHRTTPKNLHPRIVSMRSFRLEP 207
           RPN   R++S    LP +LH   PK L P+  S    +L P
Sbjct: 733 RPNFVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGP 773


>AK096011-1|BAC04672.1|  504|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38692 fis, clone KIDNE2001713, weakly similar to
           Oreochromis niloticus sex-determining protein DMO mRNA.
           ).
          Length = 504

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 45  RYASTDKVCGLEFFTTQSPSEKILELNTTSPSPQNNSKELASKNSLHEVF 194
           R AS       EFF    P EK  +  +   S QN  +EL SK+  H+++
Sbjct: 200 RQASGSATPAFEFFQQDYPEEKQEQKESKCESCQNGQEELISKS--HQLY 247


>AB051557-1|BAB21861.1| 1307|Homo sapiens KIAA1770 protein protein.
          Length = 1307

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 112 SSN*ILPHLLHRTTPKNLHPRIVS 183
           S+N IL H+LHR   K+L PR  S
Sbjct: 16  SNNCILGHILHRLAEKSLPPRAES 39


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,247,790
Number of Sequences: 237096
Number of extensions: 797109
Number of successful extensions: 5584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5584
length of database: 76,859,062
effective HSP length: 68
effective length of database: 60,736,534
effective search space used: 1336203748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)