Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p19
         (272 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   2.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   2.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   6.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   8.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   8.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   8.4  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 127 LPHLLHRTTPKNLHPRIVSMRSFRLEP 207
           +P   H   P  L PR +   ++RL P
Sbjct: 138 IPRFRH-IGPSTLFPRFIPPNAYRLRP 163


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 210 NGFQSERPHGDYSWMQVLWSCSVEKVR 130
           +G  S   HG  SW Q     ++E +R
Sbjct: 398 SGQSSSHHHGSKSWTQEDMDAALEALR 424


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 35  SSQSIRFYGQGLRAGILYDPISIREDPRTEYYL 133
           ++Q+  +YG   +    +   S   D RTEYYL
Sbjct: 2   ANQTANYYGDVYQWN--HTVSSGERDTRTEYYL 32


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 182 P*GLSDWNPFHLPYFSAPVNNHFTDF 259
           P G  +  PF L  + +PV++ +  +
Sbjct: 607 PRGKKEGMPFQLFLYVSPVSSEYNQY 632


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 182 P*GLSDWNPFHLPYFSAPVNNHFTDF 259
           P G  +  PF L  + +PV++ +  +
Sbjct: 607 PRGKKEGMPFQLFLYVSPVSSEYNQY 632


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 87  TTQSPSEKILELNTTSPSPQNNSKELASKNSLHE 188
           TT SP+ +     +T+ S ++    + +K+ LHE
Sbjct: 382 TTASPTTEPSTTTSTTISQKHIKVFVVNKDILHE 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,309
Number of Sequences: 438
Number of extensions: 1470
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)