Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p18
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   1.8  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   4.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   5.4  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   5.4  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   9.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.4  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    24   9.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   9.4  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   9.4  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    24   9.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    24   9.4  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    24   9.4  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       24   9.4  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = -3

Query: 281 TNPHRLRRTSKSREIIQGNNYIVQYSWFCMGLYSSAILAVSVYS 150
           T+P+ L + ++   +++ N Y+VQ     + LY++++ +   Y+
Sbjct: 261 THPNVLDKWNEFISLLKSNGYLVQEIQLPISLYANSVYSTMAYA 304


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 236 IQGNNYIVQYSWFCMGLYSSAILAVSVYSWC 144
           + G+N  V+ SWF M  Y   + + +V  +C
Sbjct: 304 LYGSNEEVENSWFHMHFYPPLLRSATVKKFC 334


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 298 DFFTSIPTHIDYVGQAKAEKL 236
           D ++ +P++++Y   AKAEKL
Sbjct: 843 DTWSRLPSNLEYCSWAKAEKL 863


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 41  CWFVITVLRNLPVQRIASVHWPWRNSKN-GSKQKSSTKNIH*LRELLNYITPYKTNY 208
           C  +I  LR L   ++  V    R +K+ G+KQ S  +++  L+ L+NY      +Y
Sbjct: 331 CPDLIMSLRFLRFLQLVKVTHDQRLTKSKGTKQISQEEDLRILQPLMNYAQELSNDY 387


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 21   HFFPFLAAGL--SSPFLGTCQFRGLRRYIGHGGTVRMAASRNPAPRIY 158
            HF P+LA G+  S P +      G+     HGG +      +  P ++
Sbjct: 909  HFLPYLAEGIQSSEPEIRQAASYGIGVAAQHGGELYAEICSSALPALF 956


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 302  DGFLYIYTNPHRLRRTSKSREIIQGNNY 219
            DGF +IY+  H  R+ + S+     +NY
Sbjct: 2377 DGFPHIYSRNHDKRKENGSQGEADNSNY 2404


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 77  VQRIASVHWPWRNSKNGSKQKSSTKN 154
           +QR+ASV  P R++ + SK+K  TK+
Sbjct: 645 LQRVASVTSPSRHNSD-SKEKKQTKS 669


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 242 EIIQGNNYIVQYSWF 198
           E+ Q +NYI+ YSW+
Sbjct: 71  ELGQVDNYILSYSWY 85


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 206 SWFCMGLYSSAILAVSVYSWCWISACCHSYCSSMANV 96
           S F +G Y++AI +  VYS    S+C       ++N+
Sbjct: 72  SAFLLGSYTAAISSPGVYSMMTPSSCLSLLNPLLSNI 108


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 262 VGQAKAEKLYRAIITLFSIVGFVWGYI 182
           V  ++   L  A + LF I GFV GY+
Sbjct: 357 VAPSRRGSLATATVALFIISGFVSGYV 383


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 310 FSKMDFFTSIPTHIDYVGQAKAEKLYRAIIT 218
           FSK +F  ++P H+    +   E L+R + T
Sbjct: 235 FSKFNFKYALPIHMSLENRRSLENLFRNMNT 265


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 143 WISACCHSYCSSMANV 96
           W + C H YC S A V
Sbjct: 208 WATKCGHVYCGSCAKV 223


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 248 SREIIQGNNYIVQYSWFCMGLYSSAILAVSVYSWCWISACCHSYCS 111
           +R +++ N Y +    F + +    +L V +  +  I  CC S CS
Sbjct: 14  NRNLLEANKYKLSEITFKVYISIRRLLIVVITLYRRIVECCASLCS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,054
Number of Sequences: 5004
Number of extensions: 26552
Number of successful extensions: 67
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)