Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p17
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   0.73 
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    26   1.7  

>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 72  LTDEAXXXXXXXXXXXXLNTV*FNIKLNIYYVLQSFSNIRKSWVPTYYIPSDV 230
           L DE+            +N V   I L +Y   ++FS I+K W+P    P ++
Sbjct: 108 LKDESTLQQISPWMSLLINQVETAILLTMYLDNENFSEIQKKWLPNMSWPLNI 160


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 300 GYFDIKKKRLIFLNSEVHIFILL--VHLMVCSMLVPM 196
           GYF    K   FL + VH+ +LL  VH  + +M  PM
Sbjct: 49  GYFVPMMKLADFLKAGVHVTVLLADVHAFLDNMKAPM 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,111
Number of Sequences: 5004
Number of extensions: 23261
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)