Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p17
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   1.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   8.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   8.3  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 185 ITKRLQYIINV*LDIELNCV*VRFKKK 105
           I + LQ+I++V LD  ++C+   FK++
Sbjct: 51  IIEILQFILDVRLDYRISCLLSIFKQE 77


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 185 ITKRLQYIINV*LDIELNCV*VRFKKK 105
           I + LQ+I++V LD  ++C+   FK++
Sbjct: 19  IIEILQFILDVRLDYRISCLLSIFKQE 45


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +2

Query: 137 VQYQVKHLLCIAVV**YSKIMGTNILHT 220
           ++Y   +  CI +V    + +G ++ HT
Sbjct: 193 IEYSTGNFTCIQIVFNLRRRLGYHLFHT 220


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 236 KIKMCTSEFKKINLFFLM 289
           K+ +C+S    + +FFL+
Sbjct: 280 KVSLCSSILLSLTVFFLL 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,383
Number of Sequences: 438
Number of extensions: 1377
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)