Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p12
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   8.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -3

Query: 708 HRKNHIPRVGDFNESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGI 547
           H K    +    N  +     NT     E +  K AI IC+   + L+W  +G+
Sbjct: 241 HEKALREQAKKMNVDSLRSNANTSSQSAEIRIAKAAITICF--LYVLSWTPYGV 292


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 161 IMYLKWYTSNKD 126
           I+YL WY+SN D
Sbjct: 808 ILYLTWYSSNGD 819


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 381 GKPAHKDFGHFYGS 340
           G+P  KD+GH  GS
Sbjct: 426 GRPRAKDYGHSSGS 439


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 154 TSSGTQVIKIQFTNHESYNFIIVLLNRS 71
           T  G  + +    NH  +++ IV+ NR+
Sbjct: 466 TPRGAVLARFTHLNHADFSYTIVINNRN 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,394
Number of Sequences: 438
Number of extensions: 5118
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)