Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p11
         (831 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001962-1|AAH01962.1|  496|Homo sapiens exonuclease 3'-5' domai...    84   7e-16
AK001600-1|BAA91781.1|  496|Homo sapiens protein ( Homo sapiens ...    84   7e-16
AK027612-1|BAB55231.1|  708|Homo sapiens protein ( Homo sapiens ...    31   5.1  
AB040909-1|BAA96000.2| 2142|Homo sapiens KIAA1476 protein protein.     31   5.1  
AB032255-1|BAA89212.1| 1972|Homo sapiens bromodomain adjacent to...    31   5.1  
BC011832-1|AAH11832.3|  689|Homo sapiens Pentatricopeptide repea...    30   8.9  

>BC001962-1|AAH01962.1|  496|Homo sapiens exonuclease 3'-5'
           domain-like 2 protein.
          Length = 496

 Score = 83.8 bits (198), Expect = 7e-16
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
 Frame = -1

Query: 819 DVRKKKVKSAANALLYQSQKHELPEERRKVLEQIILDYYPQHKEVSEDVLKEAVELCVVQ 640
           D  +++V+S A ALL       LP +R++ L Q + ++Y     V+E++L+EA  L    
Sbjct: 371 DPERRQVRSGARALL---NAESLPTQRKEELLQALREFY-NTDVVTEEMLQEAASLETRI 426

Query: 639 ENVDYESHGXKVVEYFSKRD-GGLLALEQMWREHFINVMKPNYLPDLWSVKHNEERLWIK 463
            N +Y  HG KVV+  S+     L+ LE  WR+HF++ M+P +LP  WSV HN ++L  K
Sbjct: 427 SNENYVPHGLKVVQCHSQGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSVDHNHQKLLRK 486

Query: 462 WSE 454
           + E
Sbjct: 487 FGE 489


>AK001600-1|BAA91781.1|  496|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10738 fis, clone NT2RP3001427, weakly similar to
           WERNER SYNDROME HELICASE HOMOLOG. ).
          Length = 496

 Score = 83.8 bits (198), Expect = 7e-16
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
 Frame = -1

Query: 819 DVRKKKVKSAANALLYQSQKHELPEERRKVLEQIILDYYPQHKEVSEDVLKEAVELCVVQ 640
           D  +++V+S A ALL       LP +R++ L Q + ++Y     V+E++L+EA  L    
Sbjct: 371 DPERRQVRSGARALL---NAESLPTQRKEELLQALREFY-NTDVVTEEMLQEAASLETRI 426

Query: 639 ENVDYESHGXKVVEYFSKRD-GGLLALEQMWREHFINVMKPNYLPDLWSVKHNEERLWIK 463
            N +Y  HG KVV+  S+     L+ LE  WR+HF++ M+P +LP  WSV HN ++L  K
Sbjct: 427 SNENYVPHGLKVVQCHSQGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSVDHNHQKLLRK 486

Query: 462 WSE 454
           + E
Sbjct: 487 FGE 489


>AK027612-1|BAB55231.1|  708|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14706 fis, clone NT2RP3000596, weakly similar to
           TRICHOHYALIN. ).
          Length = 708

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = -1

Query: 831 RETLDVRKKKVKSAANALLYQSQKHELPEERRKVLEQIILDYYPQHKEVSEDVLKEAVE 655
           ++ L+ +KKK + AANA L +++K    +E R+  + ++L +  + +     +L +A+E
Sbjct: 259 QQILEAKKKKKEEAANAKLLEAEKRIKEKEMRR-QQAVLLKHQERERRRQHMMLMKAME 316


>AB040909-1|BAA96000.2| 2142|Homo sapiens KIAA1476 protein protein.
          Length = 2142

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = -1

Query: 831  RETLDVRKKKVKSAANALLYQSQKHELPEERRKVLEQIILDYYPQHKEVSEDVLKEAVE 655
            ++ L+ +KKK + AANA L +++K    +E R+  + ++L +  + +     +L +A+E
Sbjct: 936  QQILEAKKKKKEEAANAKLLEAEKRIKEKEMRR-QQAVLLKHQERERRRQHMMLMKAME 993


>AB032255-1|BAA89212.1| 1972|Homo sapiens bromodomain adjacent to
           zinc finger domain 2B protein.
          Length = 1972

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = -1

Query: 831 RETLDVRKKKVKSAANALLYQSQKHELPEERRKVLEQIILDYYPQHKEVSEDVLKEAVE 655
           ++ L+ +KKK + AANA L +++K    +E R+  + ++L +  + +     +L +A+E
Sbjct: 766 QQILEAKKKKKEEAANAKLLEAEKRIKEKEMRR-QQAVLLKHQERERRRQHMMLMKAME 823


>BC011832-1|AAH11832.3|  689|Homo sapiens Pentatricopeptide repeat
           domain 3 protein.
          Length = 689

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -1

Query: 810 KKKVKSAANALLYQSQKHELPEERRKVLEQIILDYY-PQHKEVSEDVLKEAVELCVVQEN 634
           KK  ++ A  ++    K+   +     +  ++ +Y+ PQ K++SE  LKE +EL  V+ +
Sbjct: 110 KKSGENVAKFIINSYPKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKERIELRKVKAS 169

Query: 633 VD 628
           VD
Sbjct: 170 VD 171


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,989,510
Number of Sequences: 237096
Number of extensions: 2280128
Number of successful extensions: 6242
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6237
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)