Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p11
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.65 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.65 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.65 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   1.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   1.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 474 LWIKWSEGRLSENDLKXIGARWS*I*MGRDSKYTFFSSMVIGFFKCHC 331
           LWI W EG    ++L  + A WS +  G    +   SS    FF C+C
Sbjct: 387 LWISWEEGMKVFDEL-LLDADWS-VNAGM-WMWLSCSSFFQQFFHCYC 431


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 8/36 (22%), Positives = 22/36 (61%)
 Frame = -1

Query: 759 HELPEERRKVLEQIILDYYPQHKEVSEDVLKEAVEL 652
           + +P+E+   + ++I +YY +  ++ E  LK  +++
Sbjct: 376 YTIPKEKHVEVARLIRNYYFESNKIDETTLKHLIDV 411


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 8/36 (22%), Positives = 22/36 (61%)
 Frame = -1

Query: 759 HELPEERRKVLEQIILDYYPQHKEVSEDVLKEAVEL 652
           + +P+E+   + ++I +YY +  ++ E  LK  +++
Sbjct: 376 YTIPKEKHVEVARLIRNYYFESNKIDETTLKHLIDV 411


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 332 QWHLKKPITIL-EKKVYLESLPIYIQDHLAPIXLRSFSDNLPSLHFIHNLSSLCLTDHRS 508
           QW     + +   +KV +E L       L+ I L  F D L S H     +   + ++ S
Sbjct: 495 QWSSTHTLDVAWRRKVTIEILNSLSATKLSKIILMQFGDKLESSHDSFQAALRSIENYYS 554

Query: 509 GK 514
           GK
Sbjct: 555 GK 556


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 332 QWHLKKPITIL-EKKVYLESLPIYIQDHLAPIXLRSFSDNLPSLHFIHNLSSLCLTDHRS 508
           QW     + +   +KV +E L       L+ I L  F D L S H     +   + ++ S
Sbjct: 533 QWSSTHTLDVAWRRKVTIEILNSLSATKLSKIILMQFGDKLESSHDSFQAALRSIENYYS 592

Query: 509 GK 514
           GK
Sbjct: 593 GK 594


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 475 PLFVVFDGPQIRQIIRLHDIYEMFPPHLLQSEQTAVAFREIFNNLXSV 618
           P+  VF    I  IIR +  Y + PP  + S       R+ + NL  V
Sbjct: 103 PMISVFSRQDIETIIRRNSRYPLRPPQEVISHYRRTR-RDRYTNLGLV 149


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 304 FILKNSTLATMAFKEAYYHTGEESVLRISS 393
           F +  + +  +AF   Y+ TG    LRI+S
Sbjct: 852 FTMYTTCVIWLAFVPLYFGTGNNVALRITS 881


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,145
Number of Sequences: 438
Number of extensions: 4685
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)