Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p10
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    31   0.27 
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    31   0.27 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   2.5  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.5  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   7.7  

>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 424 GCKKGSYEEHIPAIHNEELSRHAQEQSGAHVRSTA*SYYVSNLAP 558
           GC +G+  +HIP  HN E +++           T     +S++AP
Sbjct: 289 GCAQGALPQHIPVPHNTEFAQYQPSSRDLQNHPTVDESRLSSVAP 333


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 463 IHNEELSRHAQEQSGAHVRSTA*SYYVSNLAPIQIDFIQ 579
           I+NE+L     E SG +    A + Y+S +AP+++DF+Q
Sbjct: 58  INNEDLEDGTVEISG-YDNLLADALYISTIAPVKLDFVQ 95


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 589 LQSEES*ISEKCQSHSDNDIVVNQIFE*SQIQVFHYRLPLSFLVLDNW 732
           LQ E + +S K   +     ++NQ +E  + QV+   L  S     NW
Sbjct: 600 LQEEHTILSIKASYNKKESHLINQAYETQEAQVYKGMLKCSVCNFSNW 647


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
 Frame = -3

Query: 585 LFLDKVNLNRSQIANIIALGGATDMCARLFLGVAGQFFIMN----SRYMFFIGALFAAAF 418
           +FL KV  + SQI  ++A  G   +     +   G +  +N      YM  IGA      
Sbjct: 254 IFL-KVRYHWSQILGVVACIGGLVLLVVSDVISRGDYSAVNPGLGDGYMI-IGATCYGVS 311

Query: 417 RLVMIQFTTYLPLLILTGILGALRSLVHIAQPIVMAEH 304
             +   F + LPL ++ G L    S++ I Q  +   H
Sbjct: 312 NTLEEYFASKLPLYVVIGQLSLYGSIISIIQTFIFDRH 349


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 360 LGALRSLVHIAQPIVMAEHVPIELYPSAYGLYMLLAGAISLSVG 229
           + A+++ +  A+  V  E VPI++   A  LY+LL  A+  S+G
Sbjct: 199 INAIKAALKAAED-VHTEEVPIKVKLVAPPLYVLLTNALDKSLG 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,571,194
Number of Sequences: 5004
Number of extensions: 78078
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)