Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p10
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   4.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 262 HVESISRWVQLYGNVFSHHYRLRYMHQRPQGSEY 363
           HV+   ++   YGN FS  Y +      P  + Y
Sbjct: 422 HVQETDKYDAYYGNRFSGEYEIPAHGLPPSATRY 455


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 191 MWLLSLCWLCVIYAALFRG 135
           +WL+SL W  ++  AL  G
Sbjct: 6   IWLVSLYWYLILQIALVYG 24


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 662 SLSKVRSKYSIIVCHFPSLFLITGIGSAAIFPKLPKLETEAALYKF 799
           S S +   ++I   H+  +    GI S A   +LP  E    LYK+
Sbjct: 279 SSSIIMELHNIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKY 324


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 662 SLSKVRSKYSIIVCHFPSLFLITGIGSAAIFPKLPKLETEAALYKF 799
           S S +   ++I   H+  +    GI S A   +LP  E    LYK+
Sbjct: 294 SSSIIMELHNIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKY 339


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 489 VAGQFFIMNSRYMFFIGALFAAAFRLVMIQFTTYLPLLILTGILGALRSL 340
           VAGQF       + F   L     +LV I    Y P  I+  I G + S+
Sbjct: 253 VAGQFGAQGKLIVDFFMILNEIIMKLVGIIIMWYSPFGIMCLIAGKIMSI 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,376
Number of Sequences: 438
Number of extensions: 5386
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)