Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p08
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   4.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   4.3  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    24   5.6  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    24   5.6  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    24   7.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    23   9.8  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 204  DVRAVVNRFVAVSLSVG 254
            +VR V NRFVAV L  G
Sbjct: 1056 NVRRVTNRFVAVKLDCG 1072


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/58 (17%), Positives = 22/58 (37%)
 Frame = -1

Query: 329 FSPVITRDHIKMKFFMIFVLAVLXMANAQGNGYEPIDNRPYIVNPPKDYNPNGXGYEP 156
           F  ++  DH+      +F  A+      + + ++P+D     +    + N N     P
Sbjct: 153 FQGIVLADHVARLVLCVFATAIYLTYRRKRHTHDPLDFEERQLTEESNVNENAISQNP 210


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 91  LPWCSRWECKEYLRK 47
           +PWC+  EC++ ++K
Sbjct: 641 IPWCNTTECEKEIKK 655


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 268 LCWXWPTLKETATNLLTTARTS 203
           + W W TL  TA  +L+TA  S
Sbjct: 1   MIWFWSTLLVTAIAVLSTANES 22


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 245 QGNGYEPIDNRPYIVNPPKDYNPNGXGY 162
           QG G +  D  PY ++P   Y P G  Y
Sbjct: 186 QGAGVKA-DINPYNLSPYSQYGPEGTAY 212


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 233 YEPIDNRPYIVNPPKDYNPNGXGYEPIDNGAY*RGPS 123
           +E +D  PY++N P+     G   E     A  +GPS
Sbjct: 734 HEIVDEEPYLLNDPEKELELGCTLESALKRARAQGPS 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,911
Number of Sequences: 5004
Number of extensions: 26266
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)