Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p08
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    30   0.55 
12_01_1097 + 11531899-11532277,11532482-11533287,11534015-115342...    28   2.2  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    27   2.9  
05_01_0127 - 863755-865182                                             27   5.1  
01_06_0605 + 30548588-30548732,30549004-30549094,30549470-305495...    27   5.1  
09_04_0180 + 15367737-15367755,15368874-15369739                       26   6.7  
06_01_0882 + 6759378-6759707,6759837-6760488,6760609-6760673,676...    26   6.7  
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    26   8.9  

>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
            22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 183  VIFGRINDVRAVVNRFVAVSLSVGHXQHSEDENHEEFHFYMITSYHRRK 329
            +++G ++D     ++F+ +S        S+DEN +  H  +  +YH +K
Sbjct: 991  ILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039


>12_01_1097 +
           11531899-11532277,11532482-11533287,11534015-11534284,
           11534939-11535454
          Length = 656

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -2

Query: 145 VHISVDPPQGRPYFKPTPLPWC---SRWECKEYLRKLIT 38
           +H   D P       P+P  WC   SRW+  E  R++ T
Sbjct: 559 IHWGDDQPSRSSGMPPSPSEWCSSSSRWDLGEITRRMDT 597


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 323 PVITRDHIKMKFFMIFVLAVLXMANAQGNGYEPIDNRPYIVNPPKDYNPNGXGYEP 156
           PV  + +     FMI+  +VL + N    G  P+D+  Y+ + P DY      Y+P
Sbjct: 474 PVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYL-DLPVDYMDLFKLYDP 528


>05_01_0127 - 863755-865182
          Length = 475

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 160 NLSTTVHISVDPPQGRPYFKPTPLPWCSR 74
           NLST  H+++ P Q      P PL W  R
Sbjct: 143 NLSTGDHVALPPCQPAAKAHPDPLAWLPR 171


>01_06_0605 +
           30548588-30548732,30549004-30549094,30549470-30549536,
           30550664-30550778,30550939-30551042
          Length = 173

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = -2

Query: 157 LSTTVHISVDP--PQGRPYFKPTPLPWC 80
           L T  HI V P  P G  YF     PWC
Sbjct: 125 LETIGHILVFPGIPAGEKYFNQLSKPWC 152


>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 172 EXXTNLSTTVHISVDPPQGRPYFKPTPLP 86
           E  TN+   + +  +PP  RP   PTP P
Sbjct: 116 EPDTNVEPDLELEPEPPPPRPMPIPTPSP 144


>06_01_0882 +
           6759378-6759707,6759837-6760488,6760609-6760673,
           6761363-6761440,6761523-6761633,6761739-6761783,
           6762200-6762373,6762841-6763797
          Length = 803

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 323 PVITRDHIKMKFFMIFVLAVLXMANAQGNGYEPIDNRPYIVNPPKDYNPNGXGYEPI 153
           PV  + + +    M +  +VL + N    G  P+D  PY +  P+ Y  +   Y+P+
Sbjct: 457 PVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPY-MELPEHYLDHFKLYDPV 512


>08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,
            8779138-8779247,8781153-8781294,8782298-8782686,
            8782752-8782834,8783524-8785244,8785894-8786040,
            8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 131  GPSPRPTLLQAYPFALVLAVG 69
            GP P P+L  A PFAL+   G
Sbjct: 938  GPLPLPSLCSAVPFALLYYFG 958


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,308,847
Number of Sequences: 37544
Number of extensions: 200373
Number of successful extensions: 481
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)