Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p08
         (341 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC141884-1|AAI41885.1| 1688|Homo sapiens SIGLEC1 protein protein.      28   8.7  
AL136089-7|CAI20013.1|  448|Homo sapiens molybdenum cofactor syn...    28   8.7  
AL109804-4|CAC17543.1| 1709|Homo sapiens sialic acid binding Ig-...    28   8.7  
AK024462-1|BAB15752.1|  977|Homo sapiens FLJ00055 protein protein.     28   8.7  
AF230073-1|AAK00757.1| 1709|Homo sapiens sialoadhesin protein.         28   8.7  

>BC141884-1|AAI41885.1| 1688|Homo sapiens SIGLEC1 protein protein.
          Length = 1688

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/44 (45%), Positives = 21/44 (47%)
 Frame = -2

Query: 241 ETATNLLTTARTSLILPKITTLMEXXTNLSTTVHISVDPPQGRP 110
           ET T LL  ART   L     L E    LST V +SV  P  RP
Sbjct: 757 ETVT-LLPVARTDAALYACRILTEAGAQLSTPVLLSVLYPPDRP 799


>AL136089-7|CAI20013.1|  448|Homo sapiens molybdenum cofactor
           synthesis 1 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -1

Query: 230 EPIDNRPYIVNPPKDYNPNGXGYEPIDNGAY*RGPSPRP 114
           EP   R      P  ++P   G +P D     RGP P P
Sbjct: 368 EPAQERRCPSGGPAGWSPGSQGDQPADPSVPPRGPEPHP 406


>AL109804-4|CAC17543.1| 1709|Homo sapiens sialic acid binding
           Ig-like lectin 1, sialoadhesin protein.
          Length = 1709

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/44 (45%), Positives = 21/44 (47%)
 Frame = -2

Query: 241 ETATNLLTTARTSLILPKITTLMEXXTNLSTTVHISVDPPQGRP 110
           ET T LL  ART   L     L E    LST V +SV  P  RP
Sbjct: 757 ETVT-LLPVARTDAALYACRILTEAGAQLSTPVLLSVLYPPDRP 799


>AK024462-1|BAB15752.1|  977|Homo sapiens FLJ00055 protein protein.
          Length = 977

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/44 (45%), Positives = 21/44 (47%)
 Frame = -2

Query: 241 ETATNLLTTARTSLILPKITTLMEXXTNLSTTVHISVDPPQGRP 110
           ET T LL  ART   L     L E    LST V +SV  P  RP
Sbjct: 25  ETVT-LLPVARTDAALYACRILTEAGAQLSTPVLLSVLYPPDRP 67


>AF230073-1|AAK00757.1| 1709|Homo sapiens sialoadhesin protein.
          Length = 1709

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/44 (45%), Positives = 21/44 (47%)
 Frame = -2

Query: 241 ETATNLLTTARTSLILPKITTLMEXXTNLSTTVHISVDPPQGRP 110
           ET T LL  ART   L     L E    LST V +SV  P  RP
Sbjct: 757 ETVT-LLPVARTDAALYACRILTEAGAQLSTPVLLSVLYPPDRP 799


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,930,972
Number of Sequences: 237096
Number of extensions: 1057700
Number of successful extensions: 6078
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6078
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)