Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p08
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    29   0.66 
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    29   0.66 
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    29   0.66 
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ...    28   2.0  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    27   2.7  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    27   2.7  
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    27   3.5  
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
 Frame = -2

Query: 250 TLKETATNLLTTARTSLILPKITTLMEXXTNLS-TTVHISVDPPQGRPYFKPTPLPWCSR 74
           T + T T   TT  T+  LP  TT     T    TT   + +P    P        W S 
Sbjct: 208 TAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLWTST 267

Query: 73  WECKEYL 53
            E K Y+
Sbjct: 268 AEPKSYV 274


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
 Frame = -2

Query: 250 TLKETATNLLTTARTSLILPKITTLMEXXTNLS-TTVHISVDPPQGRPYFKPTPLPWCSR 74
           T + T T   TT  T+  LP  TT     T    TT   + +P    P        W S 
Sbjct: 204 TAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLWTST 263

Query: 73  WECKEYL 53
            E K Y+
Sbjct: 264 AEPKSYV 270


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
 Frame = -2

Query: 250 TLKETATNLLTTARTSLILPKITTLMEXXTNLS-TTVHISVDPPQGRPYFKPTPLPWCSR 74
           T + T T   TT  T+  LP  TT     T    TT   + +P    P        W S 
Sbjct: 147 TAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLWTST 206

Query: 73  WECKEYL 53
            E K Y+
Sbjct: 207 AEPKSYV 213


>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
            protein H04J21.1 protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 109  YFKPTPLPWCSRW 71
            +FKP+P P+CS+W
Sbjct: 992  FFKPSPGPYCSQW 1004


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 245 QGNGYEPIDNRPYIVNPPKDYNP-NGXGYEPIDNGAY*RGPSPRPTLLQA 99
           Q   Y   +NRP+ V PP    P    G  PI + A    P P P  L A
Sbjct: 594 QAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPA 643


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -1

Query: 245 QGNGYEPIDNRPYIVNPPKDYNP-NGXGYEPIDNGAY*RGPSPRPTLLQA 99
           Q   Y   +NRP+ V PP    P    G  PI + A    P P P  L A
Sbjct: 420 QAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPA 469


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 268 LCWXWPTLKETATNLLTTARTSLILPKITTLMEXXTNLSTTV 143
           LC+ W  L  T T   TT  T+  +   TT +      +TTV
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTV 220


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = -1

Query: 251 NAQGNGYEPIDNRPYIVNPPKDYNPNGXGYEPIDNGAY*RGPSPRPTLLQAYP 93
           N   N      NRP    P  DY  N  G E    G+   G  P P + +  P
Sbjct: 420 NGNNNNNNNNGNRPRRPRPDTDYEENENGCEADLGGSNGGGNGPVPPIPEPKP 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,634,004
Number of Sequences: 27780
Number of extensions: 155997
Number of successful extensions: 424
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)