Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p08
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   7.2  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    20   9.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   9.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 202 LILPKITTLMEXXTNLSTTVHI 137
           L+LPK+T  +E    L+ TV I
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPI 539


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 284 MIFVLAVLXMANAQGNGYEPIDNRP-YIVNPP 192
           +IFV A   + +A G+G++     P +++ PP
Sbjct: 6   LIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPP 37


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 284 MIFVLAVLXMANAQGNGYEPIDNRP-YIVNPP 192
           +IFV A   + +A G+G++     P +++ PP
Sbjct: 6   LIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPP 37


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 109 KVGLGEGPR 135
           K GLG+GPR
Sbjct: 562 KTGLGKGPR 570


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = -2

Query: 163 TNLSTTVHISVDPPQGRPYFKPTPLP 86
           T L        +P   RP + P P P
Sbjct: 30  TRLRREAEPEAEPGNNRPVYIPQPRP 55


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 278 FVLAVLXMANAQGNG 234
           FV+ +L   +A GNG
Sbjct: 57  FVIGMLGFVSAMGNG 71


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 128 PSPRPTLLQAYPFAL 84
           P P+P L + YP  +
Sbjct: 31  PRPKPLLKKEYPLVM 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,498
Number of Sequences: 438
Number of extensions: 2078
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)