Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p05
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   0.45 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   3.2  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    23   5.6  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    23   5.6  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    23   7.4  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    23   7.4  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 20  ELYQHSIQPI*MLYYYSSH 76
           + Y HS++ + ++YYY SH
Sbjct: 801 QFYMHSLRSLFVVYYYESH 819


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 104 LPSGEAFNLIWDCSTNSSFEIS 169
           LP G  ++++ +CS + +FEIS
Sbjct: 759 LPKGCDYHILKECSLDINFEIS 780


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 82  YCRHYSSTS 108
           YCRHYSS S
Sbjct: 27  YCRHYSSKS 35


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 53  MLYYYSSHESTVDITAVLPSGEAF-NLIWDCSTNSSFEI 166
           +L Y S H S + + AVLP G    NL+     N+  +I
Sbjct: 210 LLRYGSLHGSILGMEAVLPDGTILDNLVTLRKDNTGLDI 248


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 106 KYCCNVYSTFMRRIVV 59
           K CCN  STF+ +I V
Sbjct: 277 KACCNELSTFLSQIDV 292


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 98  AVLPSGEAFNLIWD 139
           A +P+ +AF L+WD
Sbjct: 333 AKIPADQAFQLLWD 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,755
Number of Sequences: 5004
Number of extensions: 10802
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)