Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16p05
(198 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 20 2.4
AF134820-1|AAD40235.1| 166|Apis mellifera putative Ets-family p... 20 2.4
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 20 3.2
DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein. 19 4.3
DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein. 19 7.5
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 19 7.5
AF134817-1|AAD40233.1| 105|Apis mellifera FABP-like protein pro... 19 7.5
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 19 7.5
AB083011-1|BAC54132.1| 135|Apis mellifera fatty acid binding pr... 19 7.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 18 9.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 18 9.9
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 20.2 bits (40), Expect = 2.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 153 EFVEQSHIKLKASPDGSTAV 94
EF + KLK PDG T +
Sbjct: 643 EFGDVCRGKLKLPPDGRTEI 662
>AF134820-1|AAD40235.1| 166|Apis mellifera putative Ets-family
protein protein.
Length = 166
Score = 20.2 bits (40), Expect = 2.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 62 YYSSHESTVDITAVLPS 112
+ SS STV +TA+ PS
Sbjct: 5 FLSSSVSTVIVTALTPS 21
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 19.8 bits (39), Expect = 3.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 128 LIWDCSTNSSFEISHTSSY 184
LI+D +SSF I H Y
Sbjct: 336 LIYDFFKDSSFRIQHHFFY 354
>DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein.
Length = 135
Score = 19.4 bits (38), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 71 SHESTVDIT-AVLPSGEAFNLIWDCSTNSSFEI 166
+ ++T DI AVL E LI +CS S +
Sbjct: 80 NEKNTRDIVQAVLDDNETDQLIVECSPISDANV 112
>DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein.
Length = 135
Score = 18.6 bits (36), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 92 ITAVLPSGEAFNLIWDCS 145
+ AVL EA L+ +CS
Sbjct: 88 VRAVLNDNEADQLLAECS 105
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 18.6 bits (36), Expect = 7.5
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = -2
Query: 41 VLNVDTIHGM 12
+LN+ T+HG+
Sbjct: 1247 LLNIKTLHGL 1256
>AF134817-1|AAD40233.1| 105|Apis mellifera FABP-like protein
protein.
Length = 105
Score = 18.6 bits (36), Expect = 7.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 159 KLEFVEQSHIKLKASPDGSTAVMSTVL 79
K +FV Q++ + A G +++TVL
Sbjct: 5 KFQFVSQNNFEEFAKVLGDQNLVNTVL 31
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 18.6 bits (36), Expect = 7.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 136 PYQIKSFA*RKYCCNVYSTF 77
PY SFA K C + S F
Sbjct: 107 PYPDWSFAEFKDCSKIVSAF 126
>AB083011-1|BAC54132.1| 135|Apis mellifera fatty acid binding
protein protein.
Length = 135
Score = 18.6 bits (36), Expect = 7.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 159 KLEFVEQSHIKLKASPDGSTAVMSTVL 79
K +FV Q++ + A G +++TVL
Sbjct: 7 KFQFVSQNNFEEFAKVLGDQNLVNTVL 33
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.9
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 68 SSHESTVDITAVLPSGEAFNLIWDCSTNSSFEISHTSSYVN 190
S + T+ +T +L NL+ + +S + SY N
Sbjct: 222 SGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFN 262
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.9
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 68 SSHESTVDITAVLPSGEAFNLIWDCSTNSSFEISHTSSYVN 190
S + T+ +T +L NL+ + +S + SY N
Sbjct: 222 SGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFN 262
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 18.2 bits (35), Expect = 9.9
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 68 SSHESTVDITAVLPSGEAFNLIWDCSTNSSFEISHTSSYVN 190
S + T+ +T +L NL+ + +S + SY N
Sbjct: 222 SGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFN 262
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 18.2 bits (35), Expect = 9.9
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 68 SSHESTVDITAVLPSGEAFNLIWDCSTNSSFEISHTSSYVN 190
S + T+ +T +L NL+ + +S + SY N
Sbjct: 290 SGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFN 330
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,827
Number of Sequences: 438
Number of extensions: 804
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used: 2668491
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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