Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p03
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   8.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 764 TILNQLFQKHHDDLAKILKEFSDTRWEDTFAISDLAMYNYIEMR 633
           T+L Q   +H D L ++LK+  D R  +T     L  +   E +
Sbjct: 372 TVLAQNHPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQ 415


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +3

Query: 615 WSCYKISHLNIIVHSQITNCKS 680
           W C+  +   I  H  +T C S
Sbjct: 607 WHCFNCTQYQIRDHKDVTQCIS 628


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 327 IISISVCFMLLHSLRFLRSFVSLFK 253
           I+  +VCF++   L FL  FVS  K
Sbjct: 222 ILKKTVCFVIPIMLLFLAFFVSFRK 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,800
Number of Sequences: 438
Number of extensions: 4576
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)