Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16p01
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.1  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 63  RSPSPRNSTSLS----HRNA*Q*TPRYSLNFNTWKASDYDNTKPI 185
           RS  P+  +SLS    H N       Y+ N+N +  ++Y+N K +
Sbjct: 308 RSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKL 352


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 25  RLFLKYIPMILKRDHRVQGTPLP*AIEMPS 114
           ++FLKY+P IL    R + T L   +E+P+
Sbjct: 336 KIFLKYLPTILMM-RRPKKTRLRWMMEIPN 364


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 141 NSMNIWGFIARHFDGSRKWSSLDSVISLQNHRN 43
           NS    G  + H  GS+ W+  D   +L+  RN
Sbjct: 393 NSRGHSGQSSSHHHGSKSWTQEDMDAALEALRN 425


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 476 FIALHASSASCKFSNSMKAKPGG 544
           F+A     A+C+FS   +A+ GG
Sbjct: 458 FLATVVEEAACRFSAVAQAQLGG 480


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 495 LPPPASSQIL*KRNLGDLVLPKLS 566
           L P  S  I  K+ + DLV+ KLS
Sbjct: 206 LQPVVSDPIFDKKAMSDLVICKLS 229


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 495 LPPPASSQIL*KRNLGDLVLPKLS 566
           L P  S  I  K+ + DLV+ KLS
Sbjct: 206 LQPVVSDPIFDKKAMSDLVICKLS 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,900
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)