Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16o15
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    44   2e-06
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 8/149 (5%)
 Frame = -2

Query: 841 CGGTIISRRAVLTAGHCLF-MNGSLXXXXXXXXXXXXXNHKDLTQIGRQERLVQKIILHP 665
           CG TIIS+R VLTA HC+   N +                 + T +      + K+I+HP
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVL----HSINKVIIHP 243

Query: 664 SYTY----TYSTSDLAILKV-FTWTFTDYVQPLCIWGPVYEKTKLF-GKEAIMVGFGATE 503
            Y       +  +D+A+LK      F D V P C+  P       F G +  ++G+G T 
Sbjct: 244 KYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACL--PFQHFLDSFAGSDVTVLGWGHTS 301

Query: 502 KN-VQSDILRAANTIVQNDTTCINFDADV 419
            N + S IL+     +     C  +  ++
Sbjct: 302 FNGMLSHILQKTTLNMLTQVECYKYYGNI 330


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 193 HYGWIYHHSGLHYL 152
           HY W+YH   L Y+
Sbjct: 110 HYLWLYHDKTLLYM 123


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 273 SFLNVESHLDIPNVILPT 220
           +FL +E+  D+P V  PT
Sbjct: 257 TFLGLEARTDLPKVPYPT 274


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 839 WWNHHF*ESSFDSRSL 792
           WWN      SFD +SL
Sbjct: 367 WWNMKISNLSFDKQSL 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,942
Number of Sequences: 438
Number of extensions: 6020
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)