Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16o11
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    25   0.85 
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    25   0.85 
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    25   0.85 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    25   0.85 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   8.0  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 793 MDSRSMSSWRSTFLTYHGVKSK*VSIIKRPSGVVVSEMVTTQEGCGFESRQGK 635
           ++S +   ++   + + GV+ K  SII      +  E +  +   GF+  +GK
Sbjct: 46  LNSENFGIFKRALMGFQGVRGKKNSIINDVKNELFPEDINKRAPMGFQGMRGK 98


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 793 MDSRSMSSWRSTFLTYHGVKSK*VSIIKRPSGVVVSEMVTTQEGCGFESRQGK 635
           ++S +   ++   + + GV+ K  SII      +  E +  +   GF+  +GK
Sbjct: 47  LNSENFGIFKRALMGFQGVRGKKNSIINDVKNELFPEDINKRAPMGFQGMRGK 99


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 793 MDSRSMSSWRSTFLTYHGVKSK*VSIIKRPSGVVVSEMVTTQEGCGFESRQGK 635
           ++S +   ++   + + GV+ K  SII      +  E +  +   GF+  +GK
Sbjct: 46  LNSENFGIFKRALMGFQGVRGKKNSIINDVKNELFPEDINKRAPMGFQGMRGK 98


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 793 MDSRSMSSWRSTFLTYHGVKSK*VSIIKRPSGVVVSEMVTTQEGCGFESRQGK 635
           ++S +   ++   + + GV+ K  SII      +  E +  +   GF+  +GK
Sbjct: 46  LNSENFGIFKRALMGFQGVRGKKNSIINDVKNELFPEDINKRAPMGFQGMRGK 98


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 74  YKNNNFKF-YSRYKDNNYS 21
           Y NNN+   Y+ Y +NNY+
Sbjct: 329 YNNNNYNNNYNNYNNNNYN 347



 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 68  NNNFKFYSRYKDNNYSGIHF 9
           NNN+  Y+    NNY  +++
Sbjct: 335 NNNYNNYNNNNYNNYKKLYY 354


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 14  VYPNNYCLYTSNRT*NYYFYN 76
           VYP   CLY  + T N   YN
Sbjct: 297 VYPLTGCLYYFSTTINPILYN 317


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 23  NNYCLYTSNRT*NYYFYNKEL 85
           NNY    +N   NY  YNK+L
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKL 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,600
Number of Sequences: 438
Number of extensions: 5624
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)