Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16o08
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)                   54   3e-08
SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_43374| Best HMM Match : 7tm_2 (HMM E-Value=5.4)                     27   6.3  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    27   6.3  
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)                     27   6.3  

>SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)
          Length = 187

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 26/60 (43%), Positives = 39/60 (65%)
 Frame = -1

Query: 252 ASKPQMRGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 73
           A  PQ+RG++   +K++I+ A     VAG  +K L  +  K+KYA+FY+ YDAEK  +EM
Sbjct: 121 AMAPQLRGIVVRTLKKDILHASIAGIVAGCAWKFLYADPLKKKYADFYKNYDAEKVAKEM 180


>SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 118 SILSLALITNELL-EGKTSDARESQSNNNVTFDDGVEETSHLRLARCR 258
           +++ +AL T  +L EGKT  A      N   F +   + SHL + +C+
Sbjct: 197 TVILVALATAVILFEGKTVHALHFYHGNGQPFSEPAAKCSHLAVTKCQ 244


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +1

Query: 130 LALITNELLEGKTSDARESQSNNNVTF---DDGVEETSH 237
           L+ + NEL E    + +E Q NNNVTF   D+G+   S+
Sbjct: 94  LSRLVNELFE----EVQEKQINNNVTFGPLDEGLRAASN 128


>SB_43374| Best HMM Match : 7tm_2 (HMM E-Value=5.4)
          Length = 168

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 228 DLASEACSLSILHFRQPCLIIILLKLKMPNYTV--GHSRQITSDL 356
           +L S    +SI     PC +++++ L  P Y +  GH + +   L
Sbjct: 76  NLVSPPPGISIWSITTPCFVVVVVVLPTPRYRIYYGHPQDLRLQL 120


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 138 ERKRKYAEFYRTYDAEKEFEEMRKK 64
           ERKRK A+  +  +A KE EE RK+
Sbjct: 371 ERKRKEADDRQREEARKEEEEKRKR 395


>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 974

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 63  PSCASPQIPFQHHRFCRIQHT 125
           P     Q+PF  HR C++ HT
Sbjct: 873 PVLKQVQLPFVSHRVCQVNHT 893


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,470,871
Number of Sequences: 59808
Number of extensions: 180479
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)