Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16o06
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    31   0.26 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   4.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   9.8  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.8  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   9.8  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   9.8  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   9.8  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 589 PELENSIVKLFIEACDSLTVVKDGFN 512
           P L++ IVK+  +ACD ++ + D FN
Sbjct: 654 PSLKDPIVKMIFKACDQVSALLDNFN 679


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 580 ENSIVKLFIEACDSLTVVKDGFNVLIHKDLWANNIM 473
           E  I+K+  + CD++  +      LIH+DL   N++
Sbjct: 159 EGEILKILADVCDAVAAMHYLDPPLIHRDLKIENVL 194


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = -1

Query: 802 TVTITSIARFHATFANYETKNILNGR----SEYNFYKQ---HEHLLNEPTFKDCPWLRAA 644
           T+++    R H   + Y  +++LNG+    S +N ++Q    + LL   +F+  P + AA
Sbjct: 288 TISLMIDGRLHHLISYYTPEDVLNGKLQTPSSFNLFQQLTISKDLLEYKSFRIPPLVEAA 347


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 742  NILNGRSEYNFYKQHEHLLNEPTFKDCPWLR 650
            ++++GR  ++ +    H+  E T    PW R
Sbjct: 1016 SVIDGRPHFSVFNYTHHMQEEKTHNRLPWHR 1046


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 429 SMITALLGLQSSYLNMMLLAHK 494
           S+IT LLG++SS  ++ L +HK
Sbjct: 605 SVITILLGIESSPASVKLTSHK 626


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = -1

Query: 670 KDCPWLRAAAKCISDILNTFSAKYVGLPELENSIVKLFIEA-CDSLTVVKDGFNVL--IH 500
           +D P   A +K ISDIL   SA    L + +N++ K F E+   S   +K+  NV+  + 
Sbjct: 204 QDAPTTNALSKKISDILIPASA-MKDLKDRKNALAKEFEESQPGSSLTLKEQANVIDNLR 262

Query: 499 KDLWANNI--MFKYEDCN 452
           K+++   +   F Y+  N
Sbjct: 263 KEVFGLKLKCYFLYDQLN 280


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 298 HLNENTKLRLKRIGYNWEEFLKSCENSRMFGIFQALGI 185
           H    + +  +RIG   ++ LK C  +R   I  +LG+
Sbjct: 221 HERLRSSISRERIGVEVDKMLKHCNTNRALKIIHSLGM 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,282
Number of Sequences: 5004
Number of extensions: 69809
Number of successful extensions: 241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)