Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16o03
(868 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032324-1|AAH32324.1| 336|Homo sapiens 3-hydroxyisobutyrate de... 248 2e-65
AF529362-1|AAQ09596.1| 336|Homo sapiens NS5ATP1 protein. 248 2e-65
AB050000-1|BAF42045.1| 336|Homo sapiens 3'-hydroxyisobutyrate d... 248 2e-65
AF326966-1|AAK15524.1| 547|Homo sapiens cytokine-like nuclear f... 96 2e-19
BC064940-1|AAH64940.1| 484|Homo sapiens N-PAC protein protein. 95 3e-19
BC047223-1|AAH47223.1| 553|Homo sapiens cytokine-like nuclear f... 95 3e-19
BC032855-1|AAH32855.1| 553|Homo sapiens cytokine-like nuclear f... 95 3e-19
BC003693-1|AAH03693.1| 523|Homo sapiens Similar to RIKEN cDNA 3... 95 3e-19
AY352585-1|AAQ57265.1| 553|Homo sapiens cytokine-like nuclear f... 95 3e-19
AF244907-1|AAQ14242.1| 553|Homo sapiens 3-hydroxyisobutyrate de... 95 3e-19
BC096272-1|AAH96272.1| 560|Homo sapiens HIV-1 Rev binding prote... 33 1.3
BC101805-1|AAI01806.1| 811|Homo sapiens protocadherin gamma sub... 31 5.4
AF152518-1|AAD43778.1| 811|Homo sapiens protocadherin gamma B2 ... 31 5.4
AF152331-1|AAD43725.1| 931|Homo sapiens protocadherin gamma B2 ... 31 5.4
AB025027-1|BAB85656.1| 565|Homo sapiens brain carboxylesterase ... 31 5.4
AP001745-1|BAA95527.1| 847|Homo sapiens ZNF298 protein. 31 7.2
BC031074-1|AAH31074.1| 322|Homo sapiens poly (ADP-ribose) polym... 30 9.5
BC006389-1|AAH06389.1| 323|Homo sapiens poly (ADP-ribose) polym... 30 9.5
AK024112-1|BAB14829.1| 305|Homo sapiens protein ( Homo sapiens ... 30 9.5
>BC032324-1|AAH32324.1| 336|Homo sapiens 3-hydroxyisobutyrate
dehydrogenase protein.
Length = 336
Score = 248 bits (608), Expect = 2e-65
Identities = 125/280 (44%), Positives = 177/280 (63%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
MA NL+K G+ + YD DA G +S +++L ++ ++ Y
Sbjct: 54 MAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAY 113
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
G +G++ KKGSLLIDSSTIDP V K++ + G F DAPVSGGV A++ L F
Sbjct: 114 SGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTF 173
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
M GG +++F + LL MG+ +CG +G+GQ AK+ NNML+ I+ + TAE MN+GI++
Sbjct: 174 MVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRL 233
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
GL+PK+L +LN SS R WS++ Y PVPG++ PS+ NY GGF LM KDL LA A
Sbjct: 234 GLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSA 293
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLLKEE 9
+SPI LG++A Q+YR++ ++GY +KDFS VFQ L+EE
Sbjct: 294 TSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
>AF529362-1|AAQ09596.1| 336|Homo sapiens NS5ATP1 protein.
Length = 336
Score = 248 bits (608), Expect = 2e-65
Identities = 125/280 (44%), Positives = 177/280 (63%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
MA NL+K G+ + YD DA G +S +++L ++ ++ Y
Sbjct: 54 MAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAY 113
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
G +G++ KKGSLLIDSSTIDP V K++ + G F DAPVSGGV A++ L F
Sbjct: 114 SGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTF 173
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
M GG +++F + LL MG+ +CG +G+GQ AK+ NNML+ I+ + TAE MN+GI++
Sbjct: 174 MVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRL 233
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
GL+PK+L +LN SS R WS++ Y PVPG++ PS+ NY GGF LM KDL LA A
Sbjct: 234 GLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSA 293
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLLKEE 9
+SPI LG++A Q+YR++ ++GY +KDFS VFQ L+EE
Sbjct: 294 TSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
>AB050000-1|BAF42045.1| 336|Homo sapiens 3'-hydroxyisobutyrate
dehydrogenase protein.
Length = 336
Score = 248 bits (608), Expect = 2e-65
Identities = 125/280 (44%), Positives = 177/280 (63%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
MA NL+K G+ + YD DA G +S +++L ++ ++ Y
Sbjct: 54 MAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAY 113
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
G +G++ KKGSLLIDSSTIDP V K++ + G F DAPVSGGV A++ L F
Sbjct: 114 SGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTF 173
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
M GG +++F + LL MG+ +CG +G+GQ AK+ NNML+ I+ + TAE MN+GI++
Sbjct: 174 MVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRL 233
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
GL+PK+L +LN SS R WS++ Y PVPG++ PS+ NY GGF LM KDL LA A
Sbjct: 234 GLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSA 293
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLLKEE 9
+SPI LG++A Q+YR++ ++GY +KDFS VFQ L+EE
Sbjct: 294 TSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
>AF326966-1|AAK15524.1| 547|Homo sapiens cytokine-like nuclear factor
n-pac protein.
Length = 547
Score = 95.9 bits (228), Expect = 2e-19
Identities = 68/275 (24%), Positives = 121/275 (44%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
+ +NL+K G TV ++ + A A+ G TPA + + ++ K D+
Sbjct: 282 IVSNLLKMGHTVTVWN--RTAEKEGARLGRTPAEVVSTCDITF----ACVSDPKAAKDLV 335
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
LG GV+ + G +D ST+D + ++ + + +G F +APVSG + + L
Sbjct: 336 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 395
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
+A G + +E + MG F G++G+ L NM+ G AE + +
Sbjct: 396 LAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT 455
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
G + LLD+LN S + C ++ N+ F + + KDL LA +
Sbjct: 456 GQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPDFYLKYIQKDLRLAIALG 508
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 24
+ P P+ A A ++Y+ ++ D S V++
Sbjct: 509 DAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 543
>BC064940-1|AAH64940.1| 484|Homo sapiens N-PAC protein protein.
Length = 484
Score = 95.1 bits (226), Expect = 3e-19
Identities = 63/275 (22%), Positives = 118/275 (42%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
+ +NL+K G TV ++ + + + + G + + ++ K D+
Sbjct: 213 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLV 272
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
LG GV+ + G +D ST+D + ++ + + +G F +APVSG + + L
Sbjct: 273 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 332
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
+A G + +E + MG F G++G+ L NM+ G AE + +
Sbjct: 333 LAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT 392
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
G + LLD+LN S + C ++ N+ F + + KDL LA +
Sbjct: 393 GQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPDFYLKYIQKDLRLAIALG 445
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 24
+ P P+ A A ++Y+ ++ D S V++
Sbjct: 446 DAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 480
>BC047223-1|AAH47223.1| 553|Homo sapiens cytokine-like nuclear factor
n-pac protein.
Length = 553
Score = 95.1 bits (226), Expect = 3e-19
Identities = 63/275 (22%), Positives = 118/275 (42%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
+ +NL+K G TV ++ + + + + G + + ++ K D+
Sbjct: 282 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLV 341
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
LG GV+ + G +D ST+D + ++ + + +G F +APVSG + + L
Sbjct: 342 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 401
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
+A G + +E + MG F G++G+ L NM+ G AE + +
Sbjct: 402 LAAGDRGLYEDCSSCFQTMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT 461
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
G + LLD+LN S + C ++ N+ F + + KDL LA +
Sbjct: 462 GRSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPDFYLKYIQKDLRLAIALG 514
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 24
+ P P+ A A ++Y+ ++ D S V++
Sbjct: 515 DAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
>BC032855-1|AAH32855.1| 553|Homo sapiens cytokine-like nuclear factor
n-pac protein.
Length = 553
Score = 95.1 bits (226), Expect = 3e-19
Identities = 63/275 (22%), Positives = 118/275 (42%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
+ +NL+K G TV ++ + + + + G + + ++ K D+
Sbjct: 282 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLV 341
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
LG GV+ + G +D ST+D + ++ + + +G F +APVSG + + L
Sbjct: 342 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 401
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
+A G + +E + MG F G++G+ L NM+ G AE + +
Sbjct: 402 LAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT 461
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
G + LLD+LN S + C ++ N+ F + + KDL LA +
Sbjct: 462 GQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPDFYLKYIQKDLRLAIALG 514
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 24
+ P P+ A A ++Y+ ++ D S V++
Sbjct: 515 DAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
>BC003693-1|AAH03693.1| 523|Homo sapiens Similar to RIKEN cDNA
3930401K13 gene protein.
Length = 523
Score = 95.1 bits (226), Expect = 3e-19
Identities = 63/275 (22%), Positives = 118/275 (42%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
+ +NL+K G TV ++ + + + + G + + ++ K D+
Sbjct: 252 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLV 311
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
LG GV+ + G +D ST+D + ++ + + +G F +APVSG + + L
Sbjct: 312 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 371
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
+A G + +E + MG F G++G+ L NM+ G AE + +
Sbjct: 372 LAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT 431
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
G + LLD+LN S + C ++ N+ F + + KDL LA +
Sbjct: 432 GQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPDFYLKYIQKDLRLAIALG 484
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 24
+ P P+ A A ++Y+ ++ D S V++
Sbjct: 485 DAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 519
>AY352585-1|AAQ57265.1| 553|Homo sapiens cytokine-like nuclear factor
n-pac-like protein protein.
Length = 553
Score = 95.1 bits (226), Expect = 3e-19
Identities = 63/275 (22%), Positives = 118/275 (42%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
+ +NL+K G TV ++ + + + + G + + ++ K D+
Sbjct: 282 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLV 341
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
LG GV+ + G +D ST+D + ++ + + +G F +APVSG + + L
Sbjct: 342 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 401
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
+A G + +E + MG F G++G+ L NM+ G AE + +
Sbjct: 402 LAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT 461
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
G + LLD+LN S + C ++ N+ F + + KDL LA +
Sbjct: 462 GQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPDFYLKYIQKDLRLAIALG 514
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 24
+ P P+ A A ++Y+ ++ D S V++
Sbjct: 515 DAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
>AF244907-1|AAQ14242.1| 553|Homo sapiens 3-hydroxyisobutyrate
dehydrogenase-like protein HIBDL protein.
Length = 553
Score = 95.1 bits (226), Expect = 3e-19
Identities = 63/275 (22%), Positives = 118/275 (42%)
Frame = -3
Query: 848 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXVSILTSNKVVLDVY 669
+ +NL+K G TV ++ + + + + G + + ++ K D+
Sbjct: 282 IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLV 341
Query: 668 LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAF 489
LG GV+ + G +D ST+D + ++ + + +G F +APVSG + + L
Sbjct: 342 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI 401
Query: 488 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 309
+A G + +E + MG F G++G+ L NM+ G AE + +
Sbjct: 402 LAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT 461
Query: 308 GLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 129
G + LLD+LN S + C ++ N+ F + + KDL LA +
Sbjct: 462 GQSQQTLLDILNQGQLASIFLDQKC--QNIL-----QGNFKPDFYLKYIQKDLRLAIALG 514
Query: 128 LGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 24
+ P P+ A A ++Y+ ++ D S V++
Sbjct: 515 DAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
>BC096272-1|AAH96272.1| 560|Homo sapiens HIV-1 Rev binding protein
protein.
Length = 560
Score = 33.1 bits (72), Expect = 1.3
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 469 SLRPPAMKARVAF*APMTPPDTGASVNPSPFSRAIG--KICLGTFGSIVLESIRSDPFFA 642
S + PA A+ AF P T S P+ F+ A G K + FG + + S+PF
Sbjct: 489 SFQQPAFPAQAAF-----PQQTAFSQQPNGFA-AFGQTKPVVTPFGQVAAAGVSSNPFMT 542
Query: 643 *ATTPSLPRYTSSTTLLL 696
A T P +SST L
Sbjct: 543 GAPTGQFPTGSSSTNPFL 560
>BC101805-1|AAI01806.1| 811|Homo sapiens protocadherin gamma
subfamily B, 2 protein.
Length = 811
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 45 FLAVAPGLHDAVELSCDSAQWDRRTN 122
FL + P L A +L CD+A W++ TN
Sbjct: 767 FLNITPELVPAQDLVCDNASWEQNTN 792
>AF152518-1|AAD43778.1| 811|Homo sapiens protocadherin gamma B2
short form protein protein.
Length = 811
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 45 FLAVAPGLHDAVELSCDSAQWDRRTN 122
FL + P L A +L CD+A W++ TN
Sbjct: 767 FLNITPELVPAQDLVCDNASWEQNTN 792
>AF152331-1|AAD43725.1| 931|Homo sapiens protocadherin gamma B2
protein.
Length = 931
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 45 FLAVAPGLHDAVELSCDSAQWDRRTN 122
FL + P L A +L CD+A W++ TN
Sbjct: 767 FLNITPELVPAQDLVCDNASWEQNTN 792
>AB025027-1|BAB85656.1| 565|Homo sapiens brain carboxylesterase
hBr2 protein.
Length = 565
Score = 31.1 bits (67), Expect = 5.4
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 638 KKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPV 531
K S L+ S N+P+++ P+A EK LG TD PV
Sbjct: 374 KTASSLLWKSYPIANIPEELTPLASEKYLGGTDDPV 409
>AP001745-1|BAA95527.1| 847|Homo sapiens ZNF298 protein.
Length = 847
Score = 30.7 bits (66), Expect = 7.2
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = -2
Query: 798 FQRCTERSGQERSDASQLH-C--CSR*WSRRGRF--HIDQQ*SRARRVPGQ-RWRCGSCE 637
FQ + S RS +L C C++ +SR+ H+ + SR V G+ R+RCG+CE
Sbjct: 747 FQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKHSR-NEVDGEYRYRCGTCE 805
Query: 636 K--RIASDRFEYNRSECSQTDLPYSPRERAG 550
K RI S E++ + SPR G
Sbjct: 806 KTFRIES-ALEFHNCRTGEGAGHVSPRPLCG 835
>BC031074-1|AAH31074.1| 322|Homo sapiens poly (ADP-ribose)
polymerase family, member 16 protein.
Length = 322
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 600 IYCTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDHVD-SINGCSNGVGWRHSVLGR 776
IY + +F + HN + ++ F G Y + ++ +G GW+HS+LG
Sbjct: 148 IYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGP 207
Query: 777 CVQCI 791
+ C+
Sbjct: 208 ILSCV 212
>BC006389-1|AAH06389.1| 323|Homo sapiens poly (ADP-ribose)
polymerase family, member 16 protein.
Length = 323
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 600 IYCTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDHVD-SINGCSNGVGWRHSVLGR 776
IY + +F + HN + ++ F G Y + ++ +G GW+HS+LG
Sbjct: 148 IYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGP 207
Query: 777 CVQCI 791
+ C+
Sbjct: 208 ILSCV 212
>AK024112-1|BAB14829.1| 305|Homo sapiens protein ( Homo sapiens
cDNA FLJ14050 fis, clone HEMBA1006796. ).
Length = 305
Score = 30.3 bits (65), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 561 ERAGIHRCTCIWRSHGCSERYPGLHG 484
E+ G+HR TC +R GC+ PG G
Sbjct: 118 EQPGLHRATCGFRGLGCAPGCPGSGG 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,635,842
Number of Sequences: 237096
Number of extensions: 3747826
Number of successful extensions: 18188
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18175
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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