Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16n19
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.89 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.3  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 791 RLSCDCILREINVLD 835
           +L C+CIL+  N+LD
Sbjct: 60  QLYCECILKNFNILD 74


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = -3

Query: 688 YFKGAWSSKFDERLTSDRDFYVSKDKTIKVP 596
           +F+ +++++  +RLTS  + +V   K +++P
Sbjct: 78  HFESSFNAQSWQRLTSLHELHVHGCKVLRIP 108


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +2

Query: 137 VEYSWLTYNGTQ*FYVEYVS 196
           + Y W+T +GT+  +++ V+
Sbjct: 83  ISYKWITRSGTREQFIDMVA 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,359
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)