Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16n18
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   8.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   8.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   8.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   8.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   8.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 846 GKGRLFIGIQVMAGVSSILLNVSSMWVVSALLFIAVLS 733
           G G + +   V+AG + +  ++ +MW+  AL  + V S
Sbjct: 565 GIGVVVLFAVVLAGATCLGSSIKAMWLRRALASLMVFS 602


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 765 LPTWSSRSVRYCLHRPSPV 821
           LP+W  +  + C+ +P P+
Sbjct: 28  LPSWDGKMPQPCILKPKPL 46


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 637 SRQHDPRHQRAQEPHRDELRSCLLSIRRDHSSR 539
           SR  D RH+       D  RSC     R++  +
Sbjct: 232 SRYEDSRHEDGNSYRNDGERSCSRDRSREYKKK 264


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 637 SRQHDPRHQRAQEPHRDELRSCLLSIRRDHSSR 539
           SR  D RH+       D  RSC     R++  +
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 637 SRQHDPRHQRAQEPHRDELRSCLLSIRRDHSSR 539
           SR  D RH+       D  RSC     R++  +
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 637 SRQHDPRHQRAQEPHRDELRSCLLSIRRDHSSR 539
           SR  D RH+       D  RSC     R++  +
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 637 SRQHDPRHQRAQEPHRDELRSCLLSIRRDHSSR 539
           SR  D RH+       D  RSC     R++  +
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 637 SRQHDPRHQRAQEPHRDELRSCLLSIRRDHSSR 539
           SR  D RH+       D  RSC     R++  +
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,016
Number of Sequences: 438
Number of extensions: 5714
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)