Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16n14
(808 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 142 2e-33
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 142 2e-33
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 142 2e-33
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 142 2e-33
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 142 2e-33
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 126 9e-29
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 107 4e-23
AK125510-1|BAC86187.1| 166|Homo sapiens protein ( Homo sapiens ... 40 0.002
M34031-1|AAA69735.1| 158|Homo sapiens immunoglobulin heavy chai... 33 0.92
M34030-1|AAA69734.1| 157|Homo sapiens immunoglobulin heavy chai... 33 0.92
M34026-1|AAA69731.1| 155|Homo sapiens immunoglobulin heavy chai... 33 0.92
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 142 bits (343), Expect = 2e-33
Identities = 65/120 (54%), Positives = 84/120 (70%)
Frame = -2
Query: 807 LLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYG 628
LL+MGEFFQIQDD+LD FGDP+VT K GTDIQD KC+WL V LQRATP Q QI+++NYG
Sbjct: 225 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYG 284
Query: 627 VNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
+ E +AR+K LYEEL LP + +EE +Y + I+Q LP +F + I++R
Sbjct: 285 QKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 344
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 142 bits (343), Expect = 2e-33
Identities = 65/120 (54%), Positives = 84/120 (70%)
Frame = -2
Query: 807 LLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYG 628
LL+MGEFFQIQDD+LD FGDP+VT K GTDIQD KC+WL V LQRATP Q QI+++NYG
Sbjct: 232 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYG 291
Query: 627 VNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
+ E +AR+K LYEEL LP + +EE +Y + I+Q LP +F + I++R
Sbjct: 292 QKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 351
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 142 bits (343), Expect = 2e-33
Identities = 65/120 (54%), Positives = 84/120 (70%)
Frame = -2
Query: 807 LLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYG 628
LL+MGEFFQIQDD+LD FGDP+VT K GTDIQD KC+WL V LQRATP Q QI+++NYG
Sbjct: 299 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYG 358
Query: 627 VNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
+ E +AR+K LYEEL LP + +EE +Y + I+Q LP +F + I++R
Sbjct: 359 QKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 418
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 142 bits (343), Expect = 2e-33
Identities = 65/120 (54%), Positives = 84/120 (70%)
Frame = -2
Query: 807 LLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYG 628
LL+MGEFFQIQDD+LD FGDP+VT K GTDIQD KC+WL V LQRATP Q QI+++NYG
Sbjct: 298 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYG 357
Query: 627 VNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
+ E +AR+K LYEEL LP + +EE +Y + I+Q LP +F + I++R
Sbjct: 358 QKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 417
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 142 bits (343), Expect = 2e-33
Identities = 65/120 (54%), Positives = 84/120 (70%)
Frame = -2
Query: 807 LLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYG 628
LL+MGEFFQIQDD+LD FGDP+VT K GTDIQD KC+WL V LQRATP Q QI+++NYG
Sbjct: 298 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYG 357
Query: 627 VNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
+ E +AR+K LYEEL LP + +EE +Y + I+Q LP +F + I++R
Sbjct: 358 QKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 417
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 126 bits (304), Expect = 9e-29
Identities = 60/120 (50%), Positives = 79/120 (65%)
Frame = -2
Query: 807 LLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYG 628
LL+MGEF QIQDD+L+ FGDP+VT K GTDIQD KC L V L RATP Q QI+++NYG
Sbjct: 227 LLEMGEFSQIQDDYLELFGDPSVTGKIGTDIQDXKCNCLXVQCLXRATPEQYQILKENYG 286
Query: 627 VNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 448
+ E + R+K LYEEL LP + +EE +Y + I+Q LP +F + I++R
Sbjct: 287 QKEAEKVPRVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARQIYKR 346
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 107 bits (258), Expect = 4e-23
Identities = 48/91 (52%), Positives = 65/91 (71%)
Frame = -2
Query: 807 LLKMGEFFQIQDDFLDCFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYG 628
LL++ EFFQIQDD+LD GDP+VT + G D QD KC+WL V L +ATP Q QI+++NY
Sbjct: 200 LLEIQEFFQIQDDYLDFSGDPSVTGRVGNDFQDNKCSWLVVQCLLQATPEQYQILKENYR 259
Query: 627 VNKPEAIARIKDLYEELQLPHTYSVFEETTY 535
+ E +AR+K LYEEL LP + +E+ +Y
Sbjct: 260 QKEAEKVARVKALYEELDLPAVFLQYEKDSY 290
>AK125510-1|BAC86187.1| 166|Homo sapiens protein ( Homo sapiens
cDNA FLJ43522 fis, clone PLACE5000260. ).
Length = 166
Score = 39.5 bits (88), Expect(2) = 0.002
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +1
Query: 646 DLFLGRSCPLQCNDCQPSAFSILNVGTVLFSHRGVPEAVQKIILNLE 786
DL L S PLQ + QP+AF +L+V H GVP+ V+ IIL E
Sbjct: 57 DLVLFWSGPLQTLNHQPAAFVVLDVSANFAGHTGVPKEVKVIILGRE 103
Score = 22.2 bits (45), Expect(2) = 0.002
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 775 LNLEELSHLQQ 807
LNL+EL HLQQ
Sbjct: 135 LNLKELPHLQQ 145
>M34031-1|AAA69735.1| 158|Homo sapiens immunoglobulin heavy chain
protein.
Length = 158
Score = 33.5 bits (73), Expect = 0.92
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 759 CFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARI 598
CF +TE G ++ G +W+ +VAL R Q Q++E GV +P R+
Sbjct: 5 CFHSVIITEHRGLTMEFG-LSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRL 57
>M34030-1|AAA69734.1| 157|Homo sapiens immunoglobulin heavy chain
protein.
Length = 157
Score = 33.5 bits (73), Expect = 0.92
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 759 CFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARI 598
CF +TE G ++ G +W+ +VAL R Q Q++E GV +P R+
Sbjct: 3 CFHSVIITEHRGLTMEFG-LSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRL 55
>M34026-1|AAA69731.1| 155|Homo sapiens immunoglobulin heavy chain
protein.
Length = 155
Score = 33.5 bits (73), Expect = 0.92
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 759 CFGDPTVTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARI 598
CF +TE G ++ G +W+ +VAL R Q Q++E GV +P R+
Sbjct: 5 CFHSVIITEHRGLTMEFG-LSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRL 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,191,798
Number of Sequences: 237096
Number of extensions: 1917553
Number of successful extensions: 3794
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3794
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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