Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16n12
         (749 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001898-1|AAH01898.1|  247|Homo sapiens mannose-P-dolichol util...   148   2e-35
AF059752-1|AAG43121.1|  211|Homo sapiens My008 protein protein.        66   1e-10
DQ499597-1|ABF54968.1|  299|Homo sapiens HBeAg-binding protein 2...    48   4e-05
AM492791-1|CAM34545.1|  712|Homo sapiens autogenous vein graft r...    30   7.7  

>BC001898-1|AAH01898.1|  247|Homo sapiens mannose-P-dolichol
           utilization defect 1 protein.
          Length = 247

 Score =  148 bits (358), Expect = 2e-35
 Identities = 69/137 (50%), Positives = 94/137 (68%)
 Frame = -3

Query: 486 AWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVT 307
           +WGE  FL +QT  I  LV+HY G  +KG  FL+ Y  ++ VL+S  T   ++  +QA  
Sbjct: 102 SWGEALFLMLQTITICFLVMHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASN 161

Query: 306 VPIILIAKSIQIGTNYKNGSTGQLSFITCFLLFGGSVARIFTSIQETGDSIIILTYCVST 127
           VP +++ + +Q  TNY NG TGQLS IT FLLFGGS+ARIFTSIQETGD ++  T+ VS+
Sbjct: 162 VPAVVVGRLLQAATNYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSS 221

Query: 126 IANGAIVLQMLWYWNVE 76
           + NG I  Q+L+YWN +
Sbjct: 222 LCNGLIATQLLFYWNAK 238


>AF059752-1|AAG43121.1|  211|Homo sapiens My008 protein protein.
          Length = 211

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
 Frame = -3

Query: 486 AWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVT 307
           +WGE  FL +QT  I  LV+HY G  +KG  FL+ Y  ++ VL+S  T   ++  +QA  
Sbjct: 102 SWGEALFLMLQTITICFLVMHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASN 161

Query: 306 VPIILIAKSIQIGTNYKNG--STGQLSFITCFL 214
           VP +++ + +Q  TN   G  ++ Q S  +C L
Sbjct: 162 VPAVVVGRLLQAATNTTTGTQASSQPSQSSCCL 194


>DQ499597-1|ABF54968.1|  299|Homo sapiens HBeAg-binding protein 2
           binding protein A protein.
          Length = 299

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = -3

Query: 486 AWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDIL 328
           +WGE  FL +QT  I  LV+HY G  +KG  FL+ Y  ++ VL+S  T   ++
Sbjct: 102 SWGEALFLMLQTITICFLVMHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVV 154



 Score = 32.3 bits (70), Expect = 1.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 319 AGCHCSYHSHSQVNPNRNELQKWQHWSTVVYNLLPVVWR*CSKNLHINSRNWR 161
           +G  C+     + +P  ++L +  H   + ++ LP VW     NLH +S N R
Sbjct: 157 SGLQCACCGGGEASPGSHQLPQRAHRPALSHHSLPAVWGLPGPNLHFHSGNRR 209


>AM492791-1|CAM34545.1|  712|Homo sapiens autogenous vein graft
           remodeling associated protein 8 protein.
          Length = 712

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 220 LPVVWR*CSKNLHINSRNWRLHYYSDLLCFNH 125
           +P++W  CS   HI ++ W +   S+LLC ++
Sbjct: 106 VPILWHRCSLPTHIRTQRWNV-LISNLLCISY 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,253,981
Number of Sequences: 237096
Number of extensions: 2442879
Number of successful extensions: 7806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7804
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)