Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16n05
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.90 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.90 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.90 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.4  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 704 KEAEALVEILKEYPNMKAWLSFSCKNETSLAHGENFQNVAKKCWKSNPDQLIAIGVNCCS 525
           KEA   V I   Y N +  L  S K +  + +  NF +V  +   +N ++LI +   C +
Sbjct: 360 KEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELI-LNTRCEN 418

Query: 524 P 522
           P
Sbjct: 419 P 419


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 704 KEAEALVEILKEYPNMKAWLSFSCKNETSLAHGENFQNVAKKCWKSNPDQLIAIGVNCCS 525
           KEA   V I   Y N +  L  S K +  + +  NF +V  +   +N ++LI +   C +
Sbjct: 360 KEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELI-LNTRCEN 418

Query: 524 P 522
           P
Sbjct: 419 P 419


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 704 KEAEALVEILKEYPNMKAWLSFSCKNETSLAHGENFQNVAKKCWKSNPDQLIAIGVNCCS 525
           KEA   V I   Y N +  L  S K +  + +  NF +V  +   +N ++LI +   C +
Sbjct: 360 KEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELI-LNTRCEN 418

Query: 524 P 522
           P
Sbjct: 419 P 419


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 747 LY*CLNSCPMPIFYG 791
           L+ C NSC  PI YG
Sbjct: 303 LFACTNSCMNPIVYG 317


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 169 QLPICFNKTQRKQKKIIKMKDYCKMKKSYIHRL 267
           QLPI   + + K++ ++  KD+ +   S I RL
Sbjct: 51  QLPIHGTEPRSKEEILLHAKDFLEQYFSSIRRL 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,808
Number of Sequences: 438
Number of extensions: 4845
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)