Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16n01
(916 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 482 e-137
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 87 4e-18
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 80 5e-16
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 44 2e-05
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.40
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 1.2
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 3.7
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 6.5
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 482 bits (1189), Expect = e-137
Identities = 237/291 (81%), Positives = 261/291 (89%)
Frame = -1
Query: 913 GVGERTREGNDLYHEMIESGVISLKDXTSKVALVYGQMNEPPGARARVALTGLTVAEYFR 734
GVGERTREGNDLY EM E+GVI L + SK ALV+GQMNEPPGARARVALTGLTVAEYFR
Sbjct: 232 GVGERTREGNDLYREMQETGVIKL-EGESKAALVFGQMNEPPGARARVALTGLTVAEYFR 290
Query: 733 DQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSI 554
D EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKKGSI
Sbjct: 291 DIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKGSI 350
Query: 553 TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIG 374
TSVQA+YVPADDLTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G
Sbjct: 351 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILG 410
Query: 373 AEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVF 194
EHYN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF VAEVF
Sbjct: 411 EEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAVAEVF 470
Query: 193 TGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 41
TG G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V KA+ +A+
Sbjct: 471 TGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 86.6 bits (205), Expect = 4e-18
Identities = 70/248 (28%), Positives = 122/248 (49%), Gaps = 16/248 (6%)
Frame = -1
Query: 913 GVGERTREGNDLYHEMIESGV-ISLKDXT--SKVALVYGQMNEPPGARARVALTGLTVAE 743
G GER E ++ + E + I+ K + LV N P AR TG+T+AE
Sbjct: 284 GCGERGNEMAEVLMDFPELTIDINGKPEPIMKRTTLVANTSNMPVAAREASIYTGITLAE 343
Query: 742 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI----- 578
Y+RDQ G++V + D+ R+ +A E+S L +P+ GY L + + ER
Sbjct: 344 YYRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARC 402
Query: 577 --TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 404
+ ++G+++ V A+ P D +DP + T + L + +A+ +P+++ S
Sbjct: 403 LGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSY 462
Query: 403 SRIMDPNIIGAEH----YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARK 239
S+ ++ E +N R +++I+Q S+ +II ++G LSE DK+T+ A
Sbjct: 463 SKYINALQPWYEERVPGFNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGI 522
Query: 238 IQR-FLSQ 218
I+ FL Q
Sbjct: 523 IKNDFLQQ 530
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 79.8 bits (188), Expect = 5e-16
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 7/210 (3%)
Frame = -1
Query: 826 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 647
+V L N+P R L+ +E+ Q + VL + ++ + A EVSA
Sbjct: 234 RVTLFLNLANDPTIERIITPRLALSASEFLAYQTEKHVLTILTDMTSYADALREVSAARE 293
Query: 646 RIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 473
+P GY + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 294 EVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEG 353
Query: 472 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDI 305
+ R + IYP ++ L S SR+M I +H +V+ + + + +
Sbjct: 354 QIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASM 413
Query: 304 IAILGMDELSEEDKLTVARARKIQR-FLSQ 218
+++G + LS+ED+L + K ++ F+SQ
Sbjct: 414 KSVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 44.4 bits (100), Expect = 2e-05
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 4/187 (2%)
Frame = -1
Query: 763 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 584
+G + E+FRD G+ L+ D++ + A ++S LL R P Y + + E
Sbjct: 277 SGCAMGEWFRDN-GKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 335
Query: 583 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDP 416
R GS+T++ I D++ P + D L + GI PA++
Sbjct: 336 RAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINV 395
Query: 415 LDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI 236
S SR+ + A VA ++ L Y+ + A G D L + T+ R ++
Sbjct: 396 GLSVSRVGSAAQVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRL 452
Query: 235 QRFLSQP 215
L QP
Sbjct: 453 TELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.40
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 547 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 374
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 373 AEHYNVARGVQKILQDYKSL 314
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -1
Query: 589 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 467
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 265
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 587 LHSTHVSSQSRLISYSRWDTTKQSRHF*SSLSETENV-VNEEQYILSFLITEI 742
LH + SS + Y W + + HF +++E N + ++Q+ SF++ +
Sbjct: 198 LHISFASSLTNEDEYQNWVSQDRESHFFKTMNEIINTKIQKDQFSESFIVDSL 250
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 671 SSLSETENVVNEEQYILSFLITEIFSNSE 757
+ L N +NEE Y+++ L TEIF ++
Sbjct: 705 NELKNESNKINEEYYLMNELNTEIFIQAQ 733
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 571 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 434
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,719,696
Number of Sequences: 5004
Number of extensions: 78271
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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