Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m24
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1693 + 39238710-39238805,39239051-39239293,39239388-392395...    29   4.8  
12_01_0110 + 855275-855493,856235-856363,856687-856864,857070-85...    28   6.4  

>01_06_1693 +
           39238710-39238805,39239051-39239293,39239388-39239573,
           39239654-39239902,39240012-39240251
          Length = 337

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 631 VEAPVSGSIILAGAILKXGGYGLLRVIIFLQEVNXKLN 518
           V+ PVSG +   GA L+     + +V IFLQE N   N
Sbjct: 206 VQYPVSGFVFEGGACLEDLSDVVSKVCIFLQENNKPFN 243


>12_01_0110 +
           855275-855493,856235-856363,856687-856864,857070-857128
          Length = 194

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 599 SWCYIKXRWLWLTTGY 552
           SWC+ K RWL  ++GY
Sbjct: 16  SWCWFKLRWLLESSGY 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,929,549
Number of Sequences: 37544
Number of extensions: 118946
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)