Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m23
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   1.1  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 185 KNQSSRSLITYLHII-QNLHFEI 250
           KN++ R + TYLH++ Q++H  I
Sbjct: 40  KNRTGRYMFTYLHLLYQDVHVMI 62


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 662 IINLEISTYHHNLPIPNNSYNSKFIKLVICLISYVEFV 549
           I +L   T H+N    NN+YN+   K +   I+Y+E V
Sbjct: 82  ISSLSNKTIHNNNNYNNNNYNN--YKKLYYNINYIEQV 117


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 107 VFSNGQVILSCMILQFLTGFRNHLKHKNQSSRSLITYLHIIQNLHFEILL 256
           +F    +I+ CM + FLT    +L   + S   +   + I+ +LH   LL
Sbjct: 245 LFYTVNIIIPCMGISFLTVLTFYL--PSDSGEKVTLSISILISLHVFFLL 292


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 107 VFSNGQVILSCMILQFLTGFRNHLKHKNQSSRSLITYLHIIQNLHFEILL 256
           +F    +I+ CM + FLT    +L   + S   +   + I+ +LH   LL
Sbjct: 245 LFYTVNIIIPCMGISFLTVLTFYL--PSDSGEKVTLSISILISLHVFFLL 292


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 662 IINLEISTYHHNLPIPNNSYNSKF 591
           I +L   T H+N    NN+YN+ +
Sbjct: 315 ISSLSNKTIHNNNNYNNNNYNNNY 338


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 108 YFQMDKSYCHV 140
           YF MD+  CH+
Sbjct: 144 YFPMDRQLCHI 154


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 108 YFQMDKSYCHV 140
           YF MD+  CH+
Sbjct: 144 YFPMDRQLCHI 154


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 108 YFQMDKSYCHV 140
           YF MD+  CH+
Sbjct: 83  YFPMDRQLCHI 93


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -1

Query: 362 DCPLLWFEGFI*NAVCGMLSFSAH*QALHEIVTIFPKES 246
           DC  +     +  A+C  + +S +   +   +TIFP+ +
Sbjct: 139 DCRYVTTTSGMFEALCNHIKYSTNKGNIRSAITIFPQRT 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,202
Number of Sequences: 438
Number of extensions: 4399
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)