Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m22
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.7  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -2

Query: 668 IKTTIICT---MNKSFIKSHIFTLQENTVHIIK*LERD 564
           + TTI+ T   +NK F +  +F +   T+H I  ++ D
Sbjct: 81  VSTTIVPTTQEINKPFKRLELFNITTTTIHSIHSIDGD 118


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 693 KYTKLCIINKNYNNMYN 643
           KY+     N NYNN YN
Sbjct: 90  KYSNYNNYNNNYNNNYN 106


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 693 KYTKLCIINKNYNNMYN 643
           KY+     N NYNN YN
Sbjct: 90  KYSNYNNYNNNYNNNYN 106


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 669 NKNYNNMYNE*IFH*ITY 616
           N NYNN  N+ +++ I Y
Sbjct: 315 NNNYNNYNNKKLYYNINY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,042
Number of Sequences: 438
Number of extensions: 4480
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)