Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m21
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...   116   3e-27
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    54   2e-08
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    43   5e-05
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    33   0.037
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    30   0.46 
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    28   1.4  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   2.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   2.4  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   3.2  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    27   3.2  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   9.8  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   9.8  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   9.8  

>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score =  116 bits (280), Expect = 3e-27
 Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 6/154 (3%)
 Frame = -2

Query: 821 STVNILMQTKKVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAYAVA-PDLLLTAVLP 645
           ST+N L+ +KKVSVSS PG T+H Q++ L   + LLDCPGLV P++A    DL+L  VLP
Sbjct: 316 STINALVGSKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLVFPSFATTQADLVLDGVLP 375

Query: 644 IDQMRSHDAAMARLCQLVSKFTFEQKYGL---LLPRTDDADEL-DYKQILTAHAYNRGFM 477
           IDQ+R +    A + + + K   E  Y +   + P  +    +   +++L   A +RGFM
Sbjct: 376 IDQLREYTGPSALMAERIPKEVLETLYTIRIRIKPIEEGGTGVPSAQEVLFPFARSRGFM 435

Query: 476 TA-AGQPDRSRSARLLLKDAASGRLRWEQLPPGY 378
            A  G PD SR+AR+LLKD  +G+L +   PP Y
Sbjct: 436 RAHHGTPDDSRAARILLKDYVNGKLLYVHPPPNY 469


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
 Frame = -2

Query: 821 STVNILMQTKKVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAYAVA-PDLLLTAVLP 645
           S +N L + K  +V+ +PG T+  Q + L   I L+DCPG+V P+   +  +LLL  V+ 
Sbjct: 325 SIINTLRKKKVCNVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSSNDSDAELLLKGVVR 384

Query: 644 IDQMRSHDAAMARLCQLVSKFTFEQKYGLLLPRTDDADELDYKQILTAHAYNRGFMTAAG 465
           ++ + + +A +  +         E+ Y +       +   D  + L   A   G +   G
Sbjct: 385 VENVSNPEAYIPTVLSRCKVKHLERTYEI-------SGWNDSTEFLAKLAKKGGRLLKGG 437

Query: 464 QPDRSRSARLLLKDAASGRLRWEQLPPG 381
           +PD +  A+++L D   G++ W   P G
Sbjct: 438 EPDEASVAKMVLNDFMRGKIPWFIGPKG 465


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
 Frame = -2

Query: 776 SMPGHTRHIQSLILDNDIELLDCPGLVLPAYAVAPDLLLTAVL-PIDQMRSHD--AAMAR 606
           ++ G T  ++ + LDN + L+D PG+V P+     DL    +L  +   +  D  A  + 
Sbjct: 305 NVAGMTTSLREVKLDNKLRLVDSPGIVFPSSDSKDDLYRLVMLNAVSSTKVDDPVAVASY 364

Query: 605 LCQLVSKFTFE-----QKYGL-LLPRTDDADELDYKQILTAHAYNRGFMTAAGQPDRSRS 444
           + Q +S+   +     Q+Y L  L  T D D       L   A  RG +   G P+ + +
Sbjct: 365 ILQFLSRVPGQLERMFQRYELPPLLNTSDIDTA--TDFLVNIARKRGRLGRGGIPNLNAA 422

Query: 443 ARLLLKDAASGRLRW 399
           A +++ D  +GR+ W
Sbjct: 423 ANIVINDWHAGRIEW 437


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 33.5 bits (73), Expect = 0.037
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -2

Query: 806 LMQTKKVSVSSMPGHTRHIQSLIL---DNDIELLDCPGLVLPAYAVAPDLL 663
           L ++K   V + PG T+ I  ++    D D+ +LD PG++ P+     D+L
Sbjct: 170 LRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPSITKPEDML 220


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 565  YFCSNVNLLTSWHSLAIAASWERIWSIGN 651
            +FC +V L   W S     SW  +W IGN
Sbjct: 2200 WFCISVFLQNFWLSSLNGRSWSYLWDIGN 2228


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 202 TPIIGFPLTCAVLFFI---AKKALSISSDLFRQPSTILASMGVG 324
           T I+G  L  AV FF     KK+LS        P T+LA +G G
Sbjct: 71  TVIVGNSLKAAVRFFAFDSIKKSLSDEHGHLTGPRTVLAGLGAG 114


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 186 SRETGNQTVEAREETRQQKQTREAKKSIRPSG 91
           S +T     + +EE    ++T E+KKSI P+G
Sbjct: 249 SIQTAPSFPKEKEEKENTEETEESKKSINPTG 280


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 239 STAHVKGKPIIGVTGAQSAERQVTKPWKQEKKHANKNKREKLRR 108
           S+ ++ G   + +   ++ E    KP K+EKK   + K+EK ++
Sbjct: 433 SSVNIDGDEEVDIDVEETVETISEKPSKKEKKDKKEKKKEKSKK 476


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
 Frame = +1

Query: 613 IAASWERIWSIGNTA----VSSKSGATAYAGNT-----NPGQSNSS----MSLSRINDCM 753
           I   W  IW+IGN      +++  G   Y+ N+      P QS+ S    +   R+N C+
Sbjct: 338 IPGFWPGIWTIGNLVRPGYLATSDGVWPYSYNSCDAGITPNQSDPSGISYLGGQRLNQCV 397

Query: 754 CR 759
           C+
Sbjct: 398 CK 399


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 270 DRQRFLRYEEKYSAR*RKTYYRSYRCSISRETGNQTVEAREETRQQKQTREAKKSIRPS 94
           D  +   Y+ +YS   +    +SYR   SR T +Q+V A   T+   +T + K S + S
Sbjct: 150 DSSQLPTYKTEYSETTKFPLGKSYRPKASRTTSSQSV-ASTMTKSSTKTSKKKSSKKNS 207


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 659 LVVNLVQRRTRATPIRDSLTVQCHCQESTIVC-AVCDQALSSRLP 790
           + ++L+     A+ I  +  V C  ++ +I+  AVCDQ ++ RLP
Sbjct: 395 IALSLISADNLASAIASAHLVICMEKDESIMNEAVCDQKITIRLP 439


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 749 QSLILDNDIELLDCPGLVLPAYAVAPDLLLTAV 651
           Q LI+DN  +LL    L+ P+Y + P LL+  +
Sbjct: 327 QQLIIDNQNQLLKVANLLEPSYEL-PALLIKPI 358


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 500 HAYNRGFMTAAGQPDRSRSARLLLKDAASGRLRWEQL 390
           H YN   +T +G P+RS   +L   + ++ R+ W +L
Sbjct: 132 HFYNED-VTRSGHPNRSIYTQLPRNEFSNARVLWNRL 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,431
Number of Sequences: 5004
Number of extensions: 56756
Number of successful extensions: 223
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)