Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16m17
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 30 0.40
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 28 1.2
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 2.1
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 26 6.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 6.5
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 26 6.5
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 26 6.5
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.6
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 8.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 8.6
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 29.9 bits (64), Expect = 0.40
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -1
Query: 539 TKDNSRRDEIYEIDDYTGFAAIISQDFKLVSGQVTLEYSNYQGENLRGMIGDPPSYADSV 360
+ + + RD IY I + F I D + + Q+ LE + E + +I DPP SV
Sbjct: 187 SSETNCRDSIYYIPARSSF---IMGDVEKTA-QILLEAIDGHLEKPKCIIIDPPWPNKSV 242
Query: 359 QKSKTYRILKNIG 321
+S Y++ +N+G
Sbjct: 243 ARSSVYKVNRNLG 255
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 545 INTKDNSRRD-EIYEIDDYTGFAAI-ISQDFKLVSGQVTLEYSNYQGENLRGMIGDPPSY 372
I T N D E+ E+DD+ + Q+F + T+ + + +LRG+ Y
Sbjct: 175 ITTDTNDEPDMEVMELDDFAKELELGFDQEFNSIDDPSTVSQTASKPISLRGLSSQERDY 234
Query: 371 ADSVQ 357
A S Q
Sbjct: 235 ASSAQ 239
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 587 EVPLDINGVDLWDDINTKDNSRRDEIYEIDDY-TGF 483
+VP +D W D + ++N + IYE D Y TGF
Sbjct: 62 QVPFYTVILDKWKDGDPRNNEANNTIYEYDIYETGF 97
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 668 FNNSNHLWNGFIHVTDW 618
FN+++ +WN F + TDW
Sbjct: 224 FNSNHKVWNEFDNQTDW 240
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 569 NGVDLWDDINTKDNSRRDEIYEIDDYTGFAAIISQDFKLVSGQV 438
NG L D +N +D Y I+DY A++SQ+ L G V
Sbjct: 1175 NGAVLVDGVNVRD-------YNINDYRKQIALVSQEPTLYQGTV 1211
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -1
Query: 233 KNKFCLYNIKEDPCETNDLSATYPDIAESMLKRLHIEISKTIPRTVP 93
K ++ LY++ +D E +L+ +PDI +++ + ++T T P
Sbjct: 490 KTEWELYDLSQDKGELENLAKVHPDILNELIEYWLVYEAETGVVTAP 536
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 614 PIFLRIAGSEVPLDINGVDLWDDINTKDNSRR 519
P FL + + +P +IN V DD+ +SRR
Sbjct: 208 PSFLAMDPNNIPPEINKVSPHDDLRPLSDSRR 239
>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 280 MFLRRFTSSFLKGFPIFLRIRYVLLFWTESA 372
+FLR+ + S L G+ FLR+RY +T ++
Sbjct: 190 VFLRKNSISRLVGYIFFLRMRYTNSHFTRAS 220
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 8.6
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = -1
Query: 413 GENLRGMIGDPPSYADSVQKSKTYRILKNIGKPFKKEDVN------LRRNIRVKCN 264
G L +GD S A SV + +LKNI + DVN LR NI+ K N
Sbjct: 7 GRRLNSALGDF-SKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKIN 61
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 164 PDIAESMLKRLHIEISKTIPRTVPLYRNPESLPRLHNFT 48
PD+ E L + T P T + ++P LP + NF+
Sbjct: 309 PDLLEEFKLFLPDNVDSTEPSTPNVQKSPNRLPPVGNFS 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,562
Number of Sequences: 5004
Number of extensions: 69834
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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